Query= MSMg01no172_p11.b1 MSMg01no172_p11.b1 CHROMAT_FILE:
MSMg01no172_p11.b1 PHD_FILE: MSMg01no172_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:32 2005
(219 letters)
>mm_chr1_187860778_187861396
Length = 619
Score = 325 bits (168), Expect = 1e-93
Identities = 209/238 (87%), Gaps = 27/238 (11%)
Strand = Plus / Minus
Query: 5 gaattcaatgactaatggctagaaggcaggacacttagttgtgaactgacaagcctggta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gaattcaatgactaatggctagaaggcaggacacttagttgtgaactgacaagcctggta 245
Query: 65 ccttcagtatttgagcccttgctttgggcctcggtgtaca-------------------- 104
||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ccttcagtatttgagcccttgctttgggcctcggtgtacactgtacctattggacatttt 185
Query: 105 ---atctca-cacagaattgttcctataagcagggatgatacttttttttcaagtgagtt 160
|||| | |||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 184 gtgatct-agcacagaattgttcctataagcagggatgatac--ttttttaaagtgagtt 128
Query: 161 tagtgtggtatgcatgtagttttctttgagtgtgaaaagggatggatggatgtagatg 218
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 127 tagtgtggtatgcatgtagttttctttgagtgtaaaaagggatggatggatgtagatg 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space: 128100
Effective search space used: 128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no172_p11.g1 MSMg01no172_p11.g1 CHROMAT_FILE:
MSMg01no172_p11.g1 PHD_FILE: MSMg01no172_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:32 2005
(316 letters)
>mm_chr1_187723947_187724662
Length = 716
Score = 594 bits (307), Expect = e-174
Identities = 313/315 (99%)
Strand = Plus / Plus
Query: 2 ctctcatgggagtagtgcactccccagggactgccttgaaagctgaatgcattccggaga 61
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctctcatgggagtagtacactccccagggactgccttgaaagctgaatgcattccggaga 261
Query: 62 gagtgagggcagaggaaggatttctttcttaaaatcataactgaagaattcttcttttaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagtgagggcagaggaaggatttctttcttaaaatcataactgaagaattcttcttttaa 321
Query: 122 tcctgggtccagttagtggtaccaggatgtgcatgggtgtagggccacccacgggagcat 181
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcctgagtccagttagtggtaccaggatgtgcatgggtgtagggccacccacgggagcat 381
Query: 182 gggaaagctaccaggagccagccacatgctagaggaaacagaccctcccttcctagtaga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gggaaagctaccaggagccagccacatgctagaggaaacagaccctcccttcctagtaga 441
Query: 242 catcaacactaataactcttcctcagtgaggctgggggtggggcttcatgttctcatcct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 catcaacactaataactcttcctcagtgaggctgggggtggggcttcatgttctcatcct 501
Query: 302 ccatatatgtgagac 316
|||||||||||||||
Sbjct: 502 ccatatatgtgagac 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
