BAC Information

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BAC

Clone NameMSMg01-173A18
Chromosome1 (Build37)
Map Location 118,013,594 - 118,013,837
singlet/doubletsinglet
Overlap geneCntnap5a
Upstream geneLOC227506
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173A18.T7 (MSMg01no173_a18.b1)MSMg01-173A18.TJ (MSMg01no173_a18.g1)
ACCAG368771AG368772
length710708
length of high quality
(start - end)
243 (382 - 624)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no173_a18.b1 PHD_FILE: MSMg01no173_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:38 2005CHROMAT_FILE: MSMg01no173_a18.g1 PHD_FILE: MSMg01no173_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCCATTACCGAGCTTTATGGTGGAAGAAATAGAAGTCAACTATTG
GTTACAAGGAGGAATGTTACACACAGTACATTTCTCTAGACTTAGTTGTA
GTTGTGAGCCAAGAAGCTTTAGTAATTACAGGTGCCACCTGATTACGCAT
TTAAAGGATACTTATTAGCCTGTGTTAAAAGATCTATAATTGGTTTCCTC
TTAAGGACTCTCTTTACACAACATTGTCATATCTTTCTTAAAACTTTTAA
TACTAAATAAAACAGTAATTTACAGGAACAAAAAAAGAGAAAAGGAGAAA
AATCAATATCTTATCTGAACCACAGCACCACAGAAGATATAGGCATAAAA
AAGCTAAGAAACGAAGCAGATTCATTCACCCACAGTGAAACCAAGTTCCC
AAACCCAAAATATCAAAGAGCTTACATGCACAACATTGTTTTTACAACTG
TTATCTATAAAGATAAAAGATTGAAATAATACCAAATGTCCTATGGATTT
GAGACCCAGTTAAGAATCAGACTAATGAAACTGTTAGTGTAACCATTATT
AATAATGTAATTTGATTGTAAAGTACAAGAATTATAATTGGTTGTGTAAG
ATGTATTCAGTGATGAGAAAGTTGTGCACGAAAGGGCCAGCGGATGCTAG
TGAGTAAAAG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTCAGCTCTGAGCCCCATTTT
TTAATGTGGTTATTCGATTTTCCCGGAGCCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAAATCATT
TCCCAATCTGTTGGTGGTCATTTTGTCTTATTGATGGTGTCTTTTGCCTT
GCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCGATTCTCGATCTTA
CAGCTCAAGCCATTGCTGTTCTATTCAGGAATTTTCTCCCTGTACCCATA
TCTTCAAGGTTTTTCCCTACTCCCCCCTCTATAAGTTTCTCTGGTTTTAT
GTGGAGTTCCTTAATCCACTTTGATTTGACCTTAGTACAAGGATATAGGA
ATGGATCAATTCGAATTCTTCTACATGATAACAGCCAGTGGTACCAGCAC
CATTTGTTGAAAATACTGTCTTTTTTCCACTGCATGGTTTAGCTCCCTTG
TCAAAGATCAAGTGACCATAGCTGTGTGGGTTCATCTCTGGGTCTTCAAT
TCTGTTCCATTGGTCTACTTGTCTGTCACTATTACAGTACCATGCAGTTT
TTAATCACAATTGCTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCC
ACCAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_a18.b1 MSMg01no173_a18.b1 CHROMAT_FILE:
MSMg01no173_a18.b1 PHD_FILE: MSMg01no173_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:38 2005
         (243 letters)



>mm_chr1_118013394_118014037
          Length = 644

 Score =  364 bits (188), Expect = e-105
 Identities = 230/244 (94%), Gaps = 1/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagatataggcataaaaaagctaagaaacgaagcagattcattcacccacagtgaaac 60
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaagatacaggcattaaaaagctaagaaacgaagcagattcattcacccacagtgaaac 385

                                                                       
Query: 61  caagttcccaaacccaaaatatcaaagagcttacatg-cacaacattgtttttacaactg 119
           | |||||| ||||||||||||||||||||||||||||  | |||| |||||| |||||||
Sbjct: 384 ccagttccaaaacccaaaatatcaaagagcttacatgtgaaaacagtgttttcacaactg 325

                                                                       
Query: 120 ttatctataaagataaaagattgaaataataccaaatgtcctatggatttgagacccagt 179
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttatctctaaagataaaagattgaaataataccaaatgtcctatggatttgagacccagt 265

                                                                       
Query: 180 taagaatcagactaatgaaactgttagtgtaaccattattaataatgtaatttgattgta 239
           |||||||||| ||||||||||||||||  ||||||||||||| |||||||||||||||||
Sbjct: 264 taagaatcagcctaatgaaactgttagcataaccattattaacaatgtaatttgattgta 205

               
Query: 240 aagt 243
           ||||
Sbjct: 204 aagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space:   148590
Effective search space used:   148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)