BAC Information

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BAC

Clone NameMSMg01-173D24
Chromosome1 (Build37)
Map Location 48,791,279 - 48,791,658
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903
Downstream geneLOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173D24.T7 (MSMg01no173_d24.b1)MSMg01-173D24.TJ (MSMg01no173_d24.g1)
ACCAG368913AG368914
length755757
length of high quality
(start - end)
323 (46 - 368)381 (377 - 757)
definitionCHROMAT_FILE: MSMg01no173_d24.b1 PHD_FILE: MSMg01no173_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:53 2005CHROMAT_FILE: MSMg01no173_d24.g1 PHD_FILE: MSMg01no173_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGATCCCCATTTTTAATGGGGTTTTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTCCCATATATTGGTTATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCTTTTCCCAATCTGTTGATGGCCTTT
CTGTCTTAGTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATG
AGGTCCCATTTGTCAATTTTCGATCTTACAGCACAAGCCATTGCTGGAAT
TTTTCAGGAATTTTTTCACCTATGCTCATATCCTTGAGGCTTTTCCCCAC
TTTCTCCTCTGTAAGTTTCTGTGTCTCCCCCCCCCCCGCGGAGTTCCTTG
ATCCACTTAGATTTGACCTTTGTACAAGGAGATAAGAATGGATCAATTCA
CATTCTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAA
TGTTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTATGGGTTCATTTCTGCATCTTCAATTCTATTCCATTG
GTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTG
CTCTGTAGTACAGCTTTAGCTCAAGCAAGGTGATTCCACCAAAGGTTCTT
TTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGAT
GAATT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGCCAAATAACTCCTTCCATGGCTTCATTCTTGGA
TCACATTTGACAAGGAAATGTATACAGCTTTTGAAGACCCAACTGGTGAA
TAGCAGAACTCAGCAATAGTGACAACATGTACCAGATTCTGCACATGAGC
AGAATCTCAGCACAGATTTGGAAATGTGGAAAAGGAATCCCAGCACTGGC
TGAAGAGATATTGACATTTGATAGTAACTAGGATTATGAAAAATCAGTTT
GTTTTATTGGTGTTAGCCCTGGTAGATCTTAAAGCATCCATGTCCCATTC
CCAGTAGTAGTAGAGAAACTTTTTATGGACTCAACTGGGGAGAAAGAGAG
AGAGGAAGAAATTTTAGAAAGGTATAAATATGATTGTAGCATGTGACACG
TATTTTATTATTAGAATTATTATTACCTATATAATAATTATTATATTATT
ATATCATTACATTATTATTATTACCACTTTAAAATATTAAAATGGTTATT
TTAAATACTTTTTAAAATCACTTACATATCTTTGGAAGTAGTACCATTAT
TGATTTTTCTTGTGCTTTGAAAAATGATGTTATATTCACTTTGTATTTCA
GAATCAACAAATTCATTCCACCCACATTAATAGTTACAATGATGTTCAAA
CTGTTAAGATAATATTTATTACCACATTCAATGATTTGTCTTCACCTGTT
CATCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_d24.g1 MSMg01no173_d24.g1 CHROMAT_FILE:
MSMg01no173_d24.g1 PHD_FILE: MSMg01no173_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:53 2005
         (381 letters)



>mm_chr1_48790932_48791712
          Length = 781

 Score =  719 bits (372), Expect = 0.0
 Identities = 378/380 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggactcaactggggagaaagagagagaggaagaaattttagaaaggtataaatatgattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ggactcaactggggagaaagagagagaggaagaaattttagaaaggtataaatatgattg 668

                                                                       
Query: 61  tagcatgtgacacgtattttattattagaattattattacctatataataattattatat 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 667 tagcatgtgacacgtattttattattaggattattattacctatataataattattatat 608

                                                                       
Query: 121 tattatatcattacattattattattaccactttaaaatattaaaatggttattttaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tattatatcattacattattattattaccactttaaaatattaaaatggttattttaaat 548

                                                                       
Query: 181 actttttaaaatcacttacatatctttggaagtagtaccattattgatttttcttgtgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 actttttaaaatcacttacatatctttggaagtagtaccattattgatttttcttgtgct 488

                                                                       
Query: 241 ttgaaaaatgatgttatattcactttgtatttcagaatcaacaaattcattccacccaca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 487 ttgaaaaatgatgttatattcactttgtatttcagaatcaacaaattcatcccacccaca 428

                                                                       
Query: 301 ttaatagttacaatgatgttcaaactgttaagataatatttattaccacattcaatgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttaatagttacaatgatgttcaaactgttaagataatatttattaccacattcaatgatt 368

                               
Query: 361 tgtcttcacctgttcatcaa 380
           ||||||||||||||||||||
Sbjct: 367 tgtcttcacctgttcatcaa 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)