CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATATTTCCAAGACTTTAAAATGAGAGGATGCTGAATTTTGTC
AATTGCTTTTTCAGCATCTAATGAAATGATCATGTATATTTTTTCCTTGA
GCTCACTTATATAATGGATGGATTGATGGATTTCTGTATATTGGACCATT
CCTGCATCCCTGGAATGAAGCCTACTTGATCATGGTGAATGATCATTTTG
TTGTGTTCTTAGATTCGGTTTGCAATAACTTTATTGAGTATTTTTGCATC
AATATTCATAAGGGAAATTGGTCTGAAGTTCTCTTTTTTGGTTGGGTTTT
TGTGTGGTTATTTTTTTTCCCCCATTCTNGCCCTGATAGAAAGAATTGGG
TAGTGTTCCTTCTGTTTTTATTTTAGAAAATAAAATGAAGAGTATTGTTA
TGTAAAGTCTTTTTTAAGGTCTGATAGAACTCTTCACTAAAGCCATCTGC
CCTGCGTTTTTCGCTTGCCTTCGTTCTGCCTTTCATTATTGCTCATACAT
TTTTAACGATTGCCTCAGTTTCTTTACGAACTCCTTACCTTATCTCCCAC
TATTAGTTCAACTTTTATCTCCCTTCTTACTATTCGCCCCTTTTCCCCAA
ATTTTTGCACTTCTTCCTTATCTTCTTATTTCTCTATTTTCTCTCCCCCC
CTCTCTTTTATACCCTATTTACCCTTTTTACCTCT

CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTGACATGAATATGTGTTG
TTTTCATGTTTATTTTGAAGCACTGACAATGTTCCTAAGTGAGTAAACAT
TTCATATCTTATGAAAGTGGTTCATTACTCTAAATAATACCTGTAGCTGT
CACACATCTTAAATTTATATAATATTTGGGAAATATTTTCTTATGTAATA
TTCAGTCCTGATATGTGAAGTTTTGTATATTCCTGGCATATGTTTTCATA
ATTTTAAATATCCCTTTTACAGTACTTTGCAGTATCTGTTTGACTGCTAA
CAGAAATATAGTTGAAGACTGATCAGCCAACAAAATGACATTTAATTAAA
TCACATTCTCCTTACCCAATTTGTTTATCAAATTCAAGTTGGTATGTTGT
CTTATCACTTTGACCTTGATCTTTTAGCTGTCTGTTAATCATCTTAACAG
AAAGCAAAATATACCGCTGTAATCTGCACTTAAGACATACATAGGAATGC
TGAAATTTTAACATGTTTATATTTCCGACTTGCAGATATTGAGATAGAAC
TCAGCACAATTGCAGTCTGAGAGTACTAGGCTTCGGCTTCCAAAGCACCG
AGCAGCCTTAAGGAGAGGTGACTGATTGAAGACTTGTTAGAAGTGCTGGG
ACTCAGAGTATGCAATTTTGAATTCAA

Query= MSMg01no173_f05.g1 MSMg01no173_f05.g1 CHROMAT_FILE:
MSMg01no173_f05.g1 PHD_FILE: MSMg01no173_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:59 2005
         (651 letters)



>mm_chr1_9461661_9462710
          Length = 1050

 Score = 1236 bits (639), Expect = 0.0
 Identities = 648/651 (99%), Gaps = 1/651 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctttgacatgaatatgtgttgttttcatgtttattttgaagcactgacaatgttcct 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 850 tttctttgacatgaatatgtgttgttttcatgtttattttgaagcaatgacaatgttcct 791

                                                                       
Query: 61  aagtgagtaaacatttcatatcttatgaaagtggttcattactctaaataatacctgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aagtgagtaaacatttcatatcttatgaaagtggttcattactctaaataatacctgtag 731

                                                                       
Query: 121 ctgtcacacatcttaaatttatataatatttgggaaatattttcttatgtaatattcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ctgtcacacatcttaaatttatataatatttgggaaatattttcttatgtaatattcagt 671

                                                                       
Query: 181 cctgatatgtgaagttttgtatattcctggcatatgttttcataattttaaatatccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cctgatatgtgaagttttgtatattcctggcatatgttttcataattttaaatatccctt 611

                                                                       
Query: 241 ttacagtactttgcagtatctgtttgactgctaacagaaatatagttgaagactgatcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttacagtactttgcagtatctgtttgactgctaacagaaatatagttgaagactgatcag 551

                                                                       
Query: 301 ccaacaaaatgacatttaattaaatcacattctccttacccaatttgtttatcaaattca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ccaacaaaatgacatttaattaaatcacattctccttacccaatttgtttatcaaattca 491

                                                                       
Query: 361 agttggtatgttgtcttatcactttgaccttgatcttttagctgtctgttaatcatctta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agttggtatgttgtcttatcactttgaccttgatcttttagctgtctgttaatcatctta 431

                                                                       
Query: 421 acagaaagcaaaatataccgctgtaatctgcacttaagacatacataggaatgctgaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 acagaaagcaaaatataccgctgtaatctgcacttaagacatacataggaatgctgaaat 371

                                                                       
Query: 481 tttaacatgtttatatttccgacttgcagatattgagatagaactcagcacaattgcagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 370 tttaacatgtttatatttccgacttgcagatattgagatagaactcagcac-attgcagt 312

                                                                       
Query: 541 ctgagagtactaggcttcggcttccaaagcaccgagcagccttaaggagaggtgactgat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctgagagtactaggcttcggcttccaaagcaccgagcagccttaaggagaggtgactgat 252

                                                              
Query: 601 tgaagacttgttagaagtgctgggactcagagtatgcaattttgaattcaa 651
           |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 251 tgaagacttgttagaagtgctgggactcagagtatggaattttgaattcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1050
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1040
Effective search space:   666640
Effective search space used:   666640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)