Query= MSMg01no173_k21.b1 MSMg01no173_k21.b1 CHROMAT_FILE:
MSMg01no173_k21.b1 PHD_FILE: MSMg01no173_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:24 2005
(315 letters)
>mm_chr1_122316064_122316778
Length = 715
Score = 547 bits (283), Expect = e-160
Identities = 304/313 (97%), Gaps = 4/313 (1%)
Strand = Plus / Minus
Query: 3 ggaattctttggatcccaacttgagacacaggcctgtggagaacctgctgggtgaggaag 62
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 411 ggaattctttggatcccaaattgagacacaggcctgtggagaacctgctgggtgaggagg 352
Query: 63 gtacttaaggcacatccccaggctttgcttgcccacacaaggcattctagaggtggaaag 122
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtacttaaggcacattgctaggctttgcttgcccacacaaggcattctagaggtggaaag 292
Query: 123 actcttcacaagaccttgatctgctagctaactggcagctatctaacagatatctaccag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 actcttcacaagaccttgatctgctagctaactggcagctatctaacagatatctaccag 232
Query: 183 ctcctcctgttccctctcccctcctcccaacacacacacacacacacacacacacacaca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ctcctcctgttccctctcccctcctcccaacacacacacacacacacacacacacacaca 172
Query: 243 cacacacacacacacaccaacccacttcttacagaatactttcatcagattaaaaacatg 302
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 cacacacacacac----caacccacttcttacagaatactttcatcagattaaaaacatg 116
Query: 303 ttctttcttgctc 315
|||||||||||||
Sbjct: 115 ttctttcttgctc 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_k21.g1 MSMg01no173_k21.g1 CHROMAT_FILE:
MSMg01no173_k21.g1 PHD_FILE: MSMg01no173_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:24 2005
(248 letters)
>mm_chr1_122184165_122184812
Length = 648
Score = 456 bits (236), Expect = e-133
Identities = 245/248 (98%)
Strand = Plus / Plus
Query: 1 ttgctcattaagtaaatgggataaccaaataattgagaaatggatccttgtccggaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctcattaagtaaatgggataaccaaataattgagaaatggatccttgtccggaagga 260
Query: 61 gtggaattgttccctgggctattgtcggtgtcctgcttactgagtagtctgacagagaca 120
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 261 gtggaattgttccctgggctattgtctgtgtcctgcttactgagtagtctgccagagaca 320
Query: 121 ggcagacagtgtcaggatcaggagtgatgagaaactgtgttaaaaagagccggaaattac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcagacagtgtcaggatcaggagtgatgagaaactgtgttaaaaagagccggaaattac 380
Query: 181 cagcggctgtaacaagagtctttgtttcctgagaagaaggagctaaaagggcccttagtg 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcggctgtaacaagagcctttgtttcctgagaagaaggagctaaaagggcccttagtg 440
Query: 241 ttttcttg 248
||||||||
Sbjct: 441 ttttcttg 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
