BAC Information

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BAC

Clone NameMSMg01-173N02
Chromosome1 (Build37)
Map Location 186,871,685 - 186,871,974
singlet/doubletsinglet
Overlap genenone
Upstream geneDusp10, EG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
Downstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173N02.T7 (MSMg01no173_n02.b1)MSMg01-173N02.TJ (MSMg01no173_n02.g1)
ACCAG369312AG369313
length718720
length of high quality
(start - end)
316 (45 - 360)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no173_n02.b1 PHD_FILE: MSMg01no173_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:33 2005CHROMAT_FILE: MSMg01no173_n02.g1 PHD_FILE: MSMg01no173_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTAGACCAGGCTGGCCTCGGACTCAGAAATCTGCCTGTCTC
TGCCTCCCAAGTGCTGGAATTAAAGGTGTGCACCACCACTGCCCAGGTTC
AGTCTATTATCATCATGGCAAAAAGCATGGCAGTGTACAGGTAGATATGG
TACTGGAGGAGCCAAGAATTTTGCATCTTGATCCCAAGGCAACCAGGAGA
TGACTGTCTTCTCCAGGCAGCCACTGGGGGGGGGGGGTCGGGTCTCTTTG
GCCCTGAGGGAAGCTTAAGCATAGGTCCTCAAAACCTACCCCCACAGTGA
TACACTTCTTTTTTTTCCACCCCCCCTCCCAGTGCCACTTCCCATGGGCC
AAGCATATTCAAACCACCACAAGAAGAGAAAGAACAAGAGAGAAAAAAAG
AGCCTGGAACAGGGTTTGGGTATATAGAACTTTAGTGTTTCTACAAGGTA
ATAAATTAATATTTAAAATACTAGTTTATATGTATGTGTGTGTTCGTATG
TTTCAGTGTGTATGCATATATATCTTCTTGTGTGTACGCATGCCCGCGGA
AGACTCAAACTTTGACGGCCTTCACAAACGGCTTTCCATCCTCTCCAGCC
CCCAAGTTATATTTCCTGACTTTCCATCTCAATTCCCATTCTACTTGACT
TCATTGTTTTCCTTCCTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCATGGTTGGGAAACAGCAACTTC
GAAGTTTCCTTTCTTAAAGAAAACTGGGCCTGACCTTTCACTGACTGCGA
TGGAGGCTGGGCTGCAAAAGTTCTGGATAAACATCCCCATGTCCTGGCAT
GAGCCAGTGTCGCCTTCTCTCTCTCTCCCCCTGCCATAGGGGATGCTGGA
TCTAGAGGAGACTGGAGAGGGAGGATTGACGCATCTGTTTCCACAGCAGC
CTTATGGGTTCCAGAGCTCAGGCCCAGACATAGGACAGGGAGCATACATG
CTGCGTATTAAATTCTTGCTGGCACGCCCCTCCTGGGGGAGGGGAAGCAG
AGGGACAGATAACAGAGCCCCAGAATGGATGTTTCCAAGGAAAGCTGGCT
CTGCCTGTTGACATCACCTCTGCCACTGGTAACAGGTCTGTCTAGAGAGA
GAGAGTAAACAGAGGGGTCCTGGCAGAATGCTCCCCATCATTCAGATTTT
GCAAAATGCTCCTCTAGGTGTCGGAGTCTGACAGGAAACTTACTGCTGTC
ACTGTAGAGCCATTAATGGTCCACGGCTGGATTTGCCATGCAGCCGTCTG
CTCTGCGGCCTCCTGTGTTTAACTGTGACACATCGGAAGCAAGATGCCTG
AAGAGTATGCTGAGTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_n02.g1 MSMg01no173_n02.g1 CHROMAT_FILE:
MSMg01no173_n02.g1 PHD_FILE: MSMg01no173_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:33 2005
         (290 letters)



>mm_chr1_186871485_186872174
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatggttgggaaacagcaacttcgaagtttcctttcttaaagaaaactgggcctgacc 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 490 tccatggttgggaaacagcaacttcaaagtttcctttcttaaagaaaactgggcctgacc 431

                                                                       
Query: 61  tttcactgactgcgatggaggctgggctgcaaaagttctggataaacatccccatgtcct 120
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 430 tttcactgactgcgatggaggctgggctgcagaagttctggataaacatccccacgtcct 371

                                                                       
Query: 121 ggcatgagccagtgtcgccttctctctctctccccctgccataggggatgctggatctag 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 370 ggcatgagccagtgtcgccttctctctctctccccctgccgtaggggatgctggatctag 311

                                                                       
Query: 181 aggagactggagagggaggattgacgcatctgtttccacagcagccttatgggttccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aggagactggagagggaggattgacgcatctgtttccacagcagccttatgggttccaga 251

                                                             
Query: 241 gctcaggcccagacataggacagggagcatacatgctgcgtattaaattc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gctcaggcccagacataggacagggagcatacatgctgcgtattaaattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)