Query= MSMg01no173_n19.b1 MSMg01no173_n19.b1 CHROMAT_FILE:
MSMg01no173_n19.b1 PHD_FILE: MSMg01no173_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:36 2005
(320 letters)
>mm_chr1_40271282_40272001
Length = 720
Score = 565 bits (292), Expect = e-165
Identities = 310/316 (98%), Gaps = 2/316 (0%)
Strand = Plus / Minus
Query: 5 gaattcttcactgtttcttactcgttacctagagatgacagataatacctgcaacatctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcttcactgtttcttactcgttacctagagatgacagataatacctgcaacatctg 460
Query: 65 tttcagacatatattcctttttctgaagacttagctctctttatga-ttttttgttttct 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 459 tttcagacatatattcctttttctgaagacttagctctctttatgatttttttgttttct 400
Query: 124 attttaaagtagtaccttctccacaacagaagaatctgaaaaaaaaagacatctgcaatc 183
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct: 399 attttaaagtagtaccttctccacgacagaagaatctg-aaaaaaaagacatctgcagtc 341
Query: 184 ttctctgtgaatatttgagaagaaagaaattgttgctgttgctaacatgggattatgttt 243
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttctcagtgaatatttgagaagaaagaaattgttgctgttgctaacatgggattatgttt 281
Query: 244 tccttcacctttgttgcatactctacccaaaatatgtatcacaggtaataagaaaacaca 303
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 280 tccttcacctttgttgcatactctacccaaaatatgcatcacaggtaataagaaaacaca 221
Query: 304 gttccataaagtatta 319
||||||||||||||||
Sbjct: 220 gttccataaagtatta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_n19.g1 MSMg01no173_n19.g1 CHROMAT_FILE:
MSMg01no173_n19.g1 PHD_FILE: MSMg01no173_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:36 2005
(497 letters)
>mm_chr1_40095949_40096844
Length = 896
Score = 627 bits (324), Expect = 0.0
Identities = 433/498 (86%), Gaps = 55/498 (11%)
Strand = Plus / Plus
Query: 1 gccaaataccccagtggcctgctcaggaagcagatcctagaaaaacccccagactccttg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 gccaaataccccagtggcctgctcaggaagcagatcctagaaaaacccc-agactccttg 259
Query: 61 ggaaaagcatagaagaactggatggaacactaggattaggaacaaacctgaaaaaggagc 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggagaagcatagaagaactggatggaacactaggattaggaacaaacctgaaaaaggagc 319
Query: 121 catgcctaaacactaagagccaatgtcaagtcagatcaaccccagaccagacaaagtgag 180
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 catgcctaaacactaaaagccaatgtcaagtcagatcaagcccagaccagacaaagtgag 379
Query: 181 c-tcactgtaaccctaactgcttgccaggaaaaaaaaaattttaaaaaaaattgattctc 239
| || ||||||||||||||||||| || |||||| |||||||
Sbjct: 380 cctc-ctgtaaccctaactgcttgaca-------aaaaat-----aaaaaat-------- 418
Query: 240 tgtaaagaaagacaatattagaaaaccttcaatggtatctataattttcccatatataat 299
||| ||| |||| || | ||| ||||||||||||
Sbjct: 419 ---aaa-aaa-----------aaaa--tt----g---------att--cccatatataat 446
Query: 300 gttcaacatgccataaaattatcagatatcctcaggaagggatacaaataatatagcaaa 359
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 447 gttcaacatgccataaaattatcagatatccttaggaagggatacaaataatatagtaaa 506
Query: 360 atgtactaaagaacctattagagttaccttggaacatttatggccgtgtttaagggagca 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct: 507 atgtactaaagaacctattagagttaccttggaacatttatggccatgtttaaaggaaca 566
Query: 420 agactagaaagttctatataaagatgagatcaatgaaacacactcatggaaatttggtaa 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 567 agactagaaagttctatataaagctgagatcaatgaaacacactcatggaaatttggtaa 626
Query: 480 cagaaatgattgataaca 497
||||||||||||||||||
Sbjct: 627 cagaaatgattgataaca 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space: 431482
Effective search space used: 431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
