BAC Information

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BAC

Clone NameMSMg01-173O24
Chromosome1 (Build37)
Map Location 90,041,226 - 90,041,515
singlet/doubletsinglet
Overlap geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b
Upstream geneEcel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561
Downstream geneUgt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173O24.T7 (MSMg01no173_o24.b1)MSMg01-173O24.TJ (MSMg01no173_o24.g1)
ACCAG369393AG369394
length691714
length of high quality
(start - end)
---291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no173_o24.b1 PHD_FILE: MSMg01no173_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:41 2005CHROMAT_FILE: MSMg01no173_o24.g1 PHD_FILE: MSMg01no173_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:42 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTAAATTTGCGGCGCTATACGACTCCTATTTTTCGAGTAGCGGGATTCAC
CTTTATTACACAAAAGGCTGACAAGGCCGGAATGAGGCTCAATCTGCTGA
CCATCCTGTACCGCGATCGCAGATCTCTGACATCTTCTGCCCACCACGCA
GAATGTGTCAAAACGATCTTCAGGTGAGCGATGATGCTGTCGATCATGCG
ACGAAGAGCAACGCCCACAATTGTTGATGACGATTGCATACTTGGCCCCA
CTCCGTTGTCTGCCTGGCGGCTCGTCAGATAATTGGAGTGGCACTACCGG
ATAATCTTTCTTTACCTCTCCTGGCTATGTATCCGGAACATGTTTCTTCC
GGAAAGAACTCCTGAAGATGGACCATTATGCTCATACACGCCTTGTTGAG
TTAATCCACAACCCGCTCGGAATCCTGATGCCCCTCAACGGATGCATGTA
GACGAAAGAATGTGGTACGCTGATCCCTTGAAGCACTACTCATGAATTAA
TCGAAATGACTTCATGATTTTCCTAGAACCATGTATGGAACTGGATCGCT
GATTCCTGAGTGACGCAACCGACTCTCGATGGAATCCACTCGATATGTAC
TCACTGGCTTGTGTATGTTAGCCAATCTTCTTCCGGTACTCTAGATGTCG
GTAGACATTGTCCGAAATGGAGGTGACTTCTGCATCTACGN
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATATCTACTATAAAGAAAGAAGC
TACATAGTTNTGGGGGCATCCAGAGGACCGAAAAAGAACAGGGAGGAGGG
TATTGAGGATTGCAAAGTACAGGATCTCAGGACTGGAGAAGAGTAAAACT
CTGTGAGGAGCCAGAGGAAAGAAAGTGAGTGTGTTGGTTGCTGGAAACAT
TCTGGAAAACATGTTCAGAGGGCCAAGAGCTGCAACTTGTGTCCCTAAGG
CCTGCAAGAGGACTGTGACCCACAAAGGTTCCACCTACTGCAGCTTCTTC
CTCAGCACGGAGGGAATTANATGAGGTCCGGGNGCCANAGCCCCACTGTG
TTCTTAATAGGGGTGGAGGAGCAGCTGGAGAGAAAACACAGAACCCACGG
TTGTGCACAGAGAGAGTGAATTAAAAACACTGCCTGATCTCCAGCCATGT
GAACGCAGGAAACAAACACGTCCACCAGGGGGCGAGCAACAGTAGCAGAG
AGGAGGCTCCCAGATCTGAGGATCATCCAGAACTGCAGTGGGAGGAGGAT
GCCCTGGGAACAGCAAGAGGGCTCCATTTCCACTACATTACCACAGTGCT
GCTTTAGTCATATATTAACCAGGATAAAGACAGGGAACAACTCTTTACTC
CCTTTCATATTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_o24.g1 MSMg01no173_o24.g1 CHROMAT_FILE:
MSMg01no173_o24.g1 PHD_FILE: MSMg01no173_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:42 2005
         (291 letters)



>mm_chr1_90041026_90041715
          Length = 690

 Score =  501 bits (259), Expect = e-146
 Identities = 283/291 (97%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatctactataaagaaagaagctacatagttntgggggcatccagaggaccgaaaaag 60
           ||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||
Sbjct: 490 tatatctactataaagaaagaagctacatagtt-tgggggcatccagaggaaagaaaaag 432

                                                                       
Query: 61  aacagggaggagggtattgaggattgcaaagtacaggatctcaggactggagaagagtaa 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 431 aacagggaggagggtattgaggactgcaaagtacaggatctcaggactggagaagagtaa 372

                                                                       
Query: 121 aactctgtgaggagccagaggaaagaaagtgagtgtgttggttgctggaaacattctgga 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 371 aactctgtgaggagccagaggaaagaaagtgagtgtgctggttgctggaaacattctgga 312

                                                                       
Query: 181 aaacatgttcagagggccaagagctgcaacttgtgtccctaaggcctgcaagaggactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaacatgttcagagggccaagagctgcaacttgtgtccctaaggcctgcaagaggactgt 252

                                                              
Query: 241 gacccacaaaggttccacctactgcagcttcttcctcagcacggagggaat 291
           ||||||||||  ||||||||||||||||||||||||||||| |||||||||
Sbjct: 251 gacccacaaattttccacctactgcagcttcttcctcagcaaggagggaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)