BAC Information

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BAC

Clone NameMSMg01-173P21
Chromosome1 (Build37)
Map Location 26,734,675 - 26,735,193
singlet/doubletsinglet
Overlap genenone
Upstream geneBai3
Downstream gene4931408C20Rik, LOC677427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173P21.T7 (MSMg01no173_p21.b1)MSMg01-173P21.TJ (MSMg01no173_p21.g1)
ACCAG369429AG369430
length752756
length of high quality
(start - end)
161 (129 - 289)519 (131 - 649)
definitionCHROMAT_FILE: MSMg01no173_p21.b1 PHD_FILE: MSMg01no173_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:45 2005CHROMAT_FILE: MSMg01no173_p21.g1 PHD_FILE: MSMg01no173_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGATCCGCGGA
ATTCAACAGTTATTTACAATAAATAGACTCCTACCAGTAATGGAGGAGTG
TTTACCTTGCTCCACATCCTCTTGACCATGTGCTATCTCTTGAGTTTTTA
TCTTAGCTATCCTGCCAAGTGTAAGATGGAATCTCAGGGTCTTCTTCTTC
TTCCTCTTCCTCTTCCTCTTCCTCTTCCTCCTCTTCCTCTTCCTCCTCCT
CCTCTTCCCCTTCCCCTTCCCCTTCCCCTTACCCTTACCCTTACCCTTAC
CCTTACCCATCCCCTTCCTCTTTTTTTTTTTTTTCCTCTTCCTCTTCCAC
ATCATCATCATTTTTAGGTGGCCTCCAAAACAAAACCCTTAGTTTTATTA
TTTTTTTTTGTTTTCTTGTGTNTCTTAAAAAATTAGGTAAAAAATGGGTG
GGGGGGGGGGTTTTTTTTTGCTTAGGTTTGGTTTGTGTTGTAGTGTGTTT
TTTTTATATTTTTATTTTAATATTTTTTAAGAAATAATATTTTTATGGTT
TTTTTGTTTTATATAATGAGTTTTAATTAGTTTATTTATTAGTATGGTTT
TGGGTTTTTGTTATTTTGTTTTTCCGAAAACTCCATCTTACCTAAAATTA
TATTCCCATATCCGCCGAACTATTAGGAACCCCTCAATTTCCTTTTGTTT
CATATTTTATACTTCCACATTCAGAATAACACTTTTCCGCCCTGTCCTCT
TT
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATGAGACTCAACTTTTCATGTA
ATAGCACTAACAGGCAGTTGTTTTTTCCAGCTCAATGCAGTATCAAGTCA
CTAGTGTTAGAATTGTCCTGACCAGCATGGTGACAGTTACAGGTGTCAGG
CAAAGAAGCAGGGTTAGTTATATTATCCTGGCATCTGACCCGTTTCTTGC
TCCTGTGACTTAACAGAATGTGAGGCTGCTCTGATCATGCAGCACTGTAG
ATGTCTTCTTTTCTAATAGAGTGTGGTTACAAGATGCTGTGGAAACACAC
ATCATTTCTTCCTGGCATTATAACTTCTTCTCATAGAGCAAACAGTGCTC
TACATTCATCTTGTTCTTCACCATGCTAAGCTCTACATGGTTGCTAAGCT
GATTTCCAAAACGAAACAAAATCCAAGAATATTAAAAAATAAATGTCGAA
ATCTAAGAATTTCTGCTTGAATAGAGATTGAGTAGCATATATCTACGTGT
AGCTAGACATGCCTATAATTCACAGAATAAATACTTTGTTTATTCTTGCT
ATCTATTTTTTTAAAAAACAGTTCAGTAATGAGTCACAAAGATACGTGAA
AATACAATCAATACTATTATAATGATATCTTGAAATTTAACCTTACATTA
TTTCAGCTGAGATGCTGGATCTGTGGCAAATTTGGTAGAGAGCAAGCCTA
ACATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_p21.g1 MSMg01no173_p21.g1 CHROMAT_FILE:
MSMg01no173_p21.g1 PHD_FILE: MSMg01no173_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:45 2005
         (519 letters)



>mm_chr1_26734475_26735393
          Length = 919

 Score =  980 bits (507), Expect = 0.0
 Identities = 516/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaatgcagtatcaagtcactagtgttagaattgtcctgaccagcatggtgacagttac 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 ctcaatgcagtatcaagtcactagtgttagaattgtcctgaccatcatggtgacagttac 260

                                                                       
Query: 61  aggtgtcaggcaaagaagcagggttagttatattatcctggcatctgacccgtttcttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgtcaggcaaagaagcagggttagttatattatcctggcatctgacccgtttcttgc 320

                                                                       
Query: 121 tcctgtgacttaacagaatgtgaggctgctctgatcatgcagcactgtagatgtcttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgtgacttaacagaatgtgaggctgctctgatcatgcagcactgtagatgtcttctt 380

                                                                       
Query: 181 ttctaatagagtgtggttacaagatgctgtggaaacacacatcatttcttcctggcatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ttctaatagagtgtggttacaagatgctgtggaaacacacatcatttcttcctggcaata 440

                                                                       
Query: 241 taacttcttctcatagagcaaacagtgctctacattcatcttgttcttcaccatgctaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacttcttctcatagagcaaacagtgctctacattcatcttgttcttcaccatgctaag 500

                                                                       
Query: 301 ctctacatggttgctaagctgatttccaaaacgaaacaaaatccaagaatattaaaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctacatggttgctaagctgatttccaaaacgaaacaaaatccaagaatattaaaaaat 560

                                                                       
Query: 361 aaatgtcgaaatctaagaatttctgcttgaatagagattgagtagcatatatctacgtgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 aaatgtcgaaatctaagaatttctgcttgaatagagattgagtagcatatatttacgtgt 620

                                                                       
Query: 421 agctagacatgcctataattcacagaataaatactttgtttattcttgctatctattttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctagacatgcctataattcacagaataaatactttgtttattcttgctatctattttt 680

                                                  
Query: 481 ttaaaaaacagttcagtaatgagtcacaaagatacgtga 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaaaaacagttcagtaatgagtcacaaagatacgtga 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)