BAC Information

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BAC

Clone NameMSMg01-174A15
Chromosome1 (Build37)
Map Location 22,107,032 - 22,107,383
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28, LOC435612
Downstream geneLOC100040338, Rims1, Rims1, EG665725, LOC665731, 4933415F23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174A15.T7 (MSMg01no174_a15.b1)MSMg01-174A15.TJ (MSMg01no174_a15.g1)
ACCAG369460AG369461
length711739
length of high quality
(start - end)
205 (430 - 634)353 (387 - 739)
definitionCHROMAT_FILE: MSMg01no174_a15.b1 PHD_FILE: MSMg01no174_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:49 2005CHROMAT_FILE: MSMg01no174_a15.g1 PHD_FILE: MSMg01no174_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTTTTGCCTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGATTTATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTTTTCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TTTCCNTCANATTCCTTANGCGTNTNCGCTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCATAATACNGAAAATAAGTATGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGATCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCTTTTTTGTTC
TGCAGTAAAGCTTTACGCCTGGCATGTTGATTCCGCCAGAAGTTCTTTTA
TCCTTGAGAAG
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAATTAAACTCAGGTTGCCAA
GTTTGTTGGGCACTGAGCCTTTATCCACTGAGCCAACTTGCTGGTGCAAA
CCATCATTGTGTTAATCTGCCTGGCTTTGTTTACCTGGGTAAAGTGATGA
TATGTCTGTTTAAAAACACAGTAAAACATTGAAAGTGTTTTCCATTTCTT
CCCACGTTAAAGGAAACTGCTAACAGCACTGGTTGCTTATGAAGTTAGGC
TGTAGCAGTTGGGCTACACTGGTAGTACTCAGAGGGGAAAAGGAAAGATT
GATGAATTGAAGTCAGGATGATTGGATTCCTGCACCGCCATGTCTAAAGA
CTGCCCTACGCAACAGCATTAGCAAACAGGAAACCATCAGTGGCAGATCA
ATCAAACACAATGACTTATTTTTCCATTAGGAGAAGACGATTGCTGTGTT
GGGTAACAAAGCAGAAACCATATCTGGGTGCTGTAGTGCAAAGCTGTACT
CTCAGATTATCTAAAGGCTGGAGGAAACAGCATATGTCTATGGGTTCAAG
ACCAGCCTGGGAGACATAATTAGACATTGACCAGAACAAAACAAAACAGA
AAGAAGCCAGAATGTTACGATAAAGATATGAGAAAATGTAAGAGGTCTGA
ATTCACAGTTGTATGTTTGAGTTTCAGAGTTACATTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_a15.g1 MSMg01no174_a15.g1 CHROMAT_FILE:
MSMg01no174_a15.g1 PHD_FILE: MSMg01no174_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:49 2005
         (353 letters)



>mm_chr1_22106831_22107583
          Length = 753

 Score =  611 bits (316), Expect = e-179
 Identities = 343/352 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   ccatgtctaaagactgccctacgcaacagcattagcaaacaggaaaccatcagtggcaga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ccatgtctaaagactgccctacgcaacagcattagcaaacaggaaaccatcagtggcaga 261

                                                                       
Query: 62  tcaatcaaacacaatgacttatttttccattaggagaagacgattgctgtgttgggtaac 121
           |||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||
Sbjct: 262 tcaatcaaacacaatgacttatttttacattaggagaagatgattgttatgttgggtaac 321

                                                                       
Query: 122 aaagcagaaaccatatctgggtgctgtagtgcaaagctgtactctcagattatctaaagg 181
           |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 322 aaagcagaaatcatatctgggtgctgtagtacaaagctgtactctcagattatctaaagg 381

                                                                       
Query: 182 ctggaggaaacagcatatgtctatgggttcaagaccagcctgggagacataattagacat 241
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 382 ctggaggcaacagcatatgtctatgggttcaagaccagcctgggaaacataattagacat 441

                                                                       
Query: 242 tgaccagaacaaaacaaaacagaaagaagccagaatgttacgataaagatatgagaaaat 301
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgatcagaacaaaacaaaacagaaagaagccagaatgttacgataaagatatgagaaaat 501

                                                               
Query: 302 gtaagaggtctgaattcacagttgtatgtttgagtttcagagttacattgta 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtaagaggtctgaattcacagttgtatgtttgagtttcagagttacattgta 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)