BAC Information

Click to search

BAC

Clone NameMSMg01-174C02
Chromosome1 (Build37)
Map Location 109,945,246 - 109,945,535
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneLOC435640, EG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174C02.T7 (MSMg01no174_c02.b1)MSMg01-174C02.TJ (MSMg01no174_c02.g1)
ACCAG369522AG369523
length727727
length of high quality
(start - end)
323 (46 - 368)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no174_c02.b1 PHD_FILE: MSMg01no174_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:55 2005CHROMAT_FILE: MSMg01no174_c02.g1 PHD_FILE: MSMg01no174_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCCAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGACGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAG
AAAAGTGGACATAGTACTACCGGAGGATCCAGTTATACCTCTCCTGGGCA
TATATCCAGAATATGCCCTTTTTGGTAACCCCCACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAACTTGGATCGATCCCTGATG
CCCCTCAACAGATGAATGTATACAGATCACGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAACGAATTTATGAAACTCCTAGTCAAA
TGTATGCATCTGGAGGGCATCATCCGGAGTGAGGTATTTTATTCTCCAAG
TACCTCTCATTACATGCATTCTCTGATAATTGGCACTTATTCCATAACCT
ATGATACCCTATATTTTTTATTCCCTTTCCTATTCACCCGATACGTCCTG
AACACGATTATTGCACTGTGTTCTTTA
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGTCCTAGAACGAAAAATTCA
TTACATTGCATAGCTGGGGATATTCTAAACGCCGCCCAAAGTTTGGGAGT
GCTCTGGGAATGTAGGTGTCTGACACAGTCATTTAACCTTCTAGCAATAT
TTGGCAAACTCTTGTTTTCGGCCAAAACTAACTTGGAGGAAATTTAGTAA
TGATGAACAAAGTAAGGGAAGTAGATTACTATTCTCAATAATTTGAGAAA
ATAAATCAATTAGTTAAAATAAAGTAGCTACACTTCAGAAATGTAAGCAT
AGAGTATTAAATAACTCATATTTATTTTTCCCCCCCCCCCCCAATCACAC
AGAATGATAGTTCATAATTTTACCATAAGACTCATTTACATAAAAGGTGA
TCAGCATTGTAATTTTAGGTCAAATTTTATACATGTCTCCAAGGAACAAT
ATTTTACAAAAATTATTTAAACTATGCTGTCTTAGTTACTTCTCCCCTTG
TGACACCAATATGCTAGGAATGAAGGGATTGTTTTTGATGATGTTTAGGT
CAAAGAAGGCATCAAATCCGGAATCTGATGTGACTATATTCCCTCCTTCT
GCCTTAAACAACTTGTTCTTTCCTCCTCTTTTTTTACCCATTCTAGAGTG
CCATAAAAAGAATTTTTCCCCCTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_c02.g1 MSMg01no174_c02.g1 CHROMAT_FILE:
MSMg01no174_c02.g1 PHD_FILE: MSMg01no174_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:55 2005
         (290 letters)



>mm_chr1_109945046_109945735
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaagtcctagaacgaaaaattcattacattgcatagctggggatattctaaacgccgcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 490 ccaagtcctagaacgaaaaattcattacattgcatagctggggatattttaaatgccgcc 431

                                                                       
Query: 61  caaagtttgggagtgctctgggaatgtaggtgtctgacacagtcatttaaccttctagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caaagtttgggagtgctctgggaatgtaggtgtctgacacagtcatttaaccttctagca 371

                                                                       
Query: 121 atatttggcaaactcttgttttcggccaaaactaacttggaggaaatttagtaatgatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atatttggcaaactcttgttttcggccaaaactaacttggaggaaatttagtaatgatga 311

                                                                       
Query: 181 acaaagtaagggaagtagattactattctcaataatttgagaaaataaatcaattagtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acaaagtaagggaagtagattactattctcaataatttgagaaaataaatcaattagtta 251

                                                             
Query: 241 aaataaagtagctacacttcagaaatgtaagcatagagtattaaataact 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaataaagtagctacacttcagaaatgtaagcatagagtattaaataact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)