BAC Information

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BAC

Clone NameMSMg01-174E16
Chromosome1 (Build37)
Map Location 30,882,514 - 30,882,825
singlet/doubletsinglet
Overlap genePhf3
Upstream geneLOC665944, EG624138, LOC100040699
Downstream geneEG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174E16.T7 (MSMg01no174_e16.b1)MSMg01-174E16.TJ (MSMg01no174_e16.g1)
ACCAG369632AG369633
length730733
length of high quality
(start - end)
320 (36 - 355)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no174_e16.b1 PHD_FILE: MSMg01no174_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:07 2005CHROMAT_FILE: MSMg01no174_e16.g1 PHD_FILE: MSMg01no174_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCA
GTGCAGCTGTGGTTGTAGAAGAGAAGGAAGGGACCACTCATTTTCCTTCT
GAATCTCAAAGCACTTTATACTAGGCAGTTGGCTTCAGGAAATAGCAACA
TGTACACTTTGCATGAAGCAAGGGAAGAGAAGTATTAAACATGAAAGAAT
TCTTCAAGATCCCTACCCTGTGGAGCAATTGTCATTGAGACGGCATGAAG
TCATCAAACATTTCAAAGAGAAACTTCCTTACAAGTAAATGTTACATTAT
TTAAATGTTCTCCTGGCTTGTGAATAAAACCTACTTACCCTTATTTTTCA
AATTTTGTGCCTCCCCCCCCCCCCGAAGACTGACTGATGACTTTGGCAGC
AGAAGGACCCCCGATGATAAAAAAGTGCCAATTGTAGCTTGCTTCCTAGA
CTCAGCGTATTACTCGGCCAGACAGTACATCACACAGGATGAAGAGCTGC
TGTCGAGGAGGGATCCATTTGGCATCACTTTAAAAACACCTCTTACATGT
AGTACTAATTTTGCTACTTACTTTGATATTTCGACCACCTTGCCTCGAAA
TCACCGCCGTACGTCACCCTATACCCCCCGTTTGTTACACCATATATCCC
CCAATAGATCAATACTCCGCTTCGCTTGCATCCCCCCTTTTCCCTTTTCC
ACCGCTCTCTTTCCCCCCTCTTTCCTTTCN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCACCCTCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCTTGTGCTTATCCCCACACCCCCGACCCAANAGGTAA
GATGGACACATGCTCCACTATGCCCATAGCAACCATATTTATAATAGCCA
GAAGTTGGAAAGATCCTAGATGCCCCTCAACAGAGGAATGTATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATAAATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATA
ATTGGATATTACCCCCAAACCTAGGATACCCAATATATAAGATATAATTT
GCTAAACACATGAAACTCAATGAGAATGAAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_e16.b1 MSMg01no174_e16.b1 CHROMAT_FILE:
MSMg01no174_e16.b1 PHD_FILE: MSMg01no174_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:07 2005
         (320 letters)



>mm_chr1_30882304_30883028
          Length = 725

 Score =  565 bits (292), Expect = e-165
 Identities = 305/312 (97%), Gaps = 5/312 (1%)
 Strand = Plus / Minus

                                                                       
Query: 11  agtcagtgcagctgtggttgtagaagagaaggaagggaccactcattttccttctgaatc 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agtcagtgcagctgtggttgtagaagagaaggaagggaccactcattttccttctgaatc 463

                                                                       
Query: 71  tcaaagcactttatactaggcagttggcttcaggaaatagcaacatgtacactttgcatg 130
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 462 tcaaagcagtttatactaggcagttggcttcaggaaatagcaatatgtacactttgcatg 403

                                                                       
Query: 131 aagcaagggaagag-----aagtattaaacatgaaagaattcttcaagatccctaccctg 185
           ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aagcaagggaagagaattaaagtattaaacatgaaagaattcttcaagatccctaccctg 343

                                                                       
Query: 186 tggagcaattgtcattgagacggcatgaagtcatcaaacatttcaaagagaaacttcctt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tggagcaattgtcattgagacggcatgaagtcatcaaacatttcaaagagaaacttcctt 283

                                                                       
Query: 246 acaagtaaatgttacattatttaaatgttctcctggcttgtgaataaaacctacttaccc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acaagtaaatgttacattatttaaatgttctcctggcttgtgaataaaacctacttaccc 223

                       
Query: 306 ttatttttcaaa 317
           ||||||||||||
Sbjct: 222 ttatttttcaaa 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 725
Length adjustment: 9
Effective length of query: 311
Effective length of database: 716
Effective search space:   222676
Effective search space used:   222676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)