BAC Information

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BAC

Clone NameMSMg01-174H15
Chromosome1 (Build37)
Map Location 27,532,233 - 27,532,547
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik, LOC677427
Downstream geneLOC100040952, EG433281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174H15.T7 (MSMg01no174_h15.b1)MSMg01-174H15.TJ (MSMg01no174_h15.g1)
ACCAG369764AG369765
length732763
length of high quality
(start - end)
319 (46 - 364)42 (77 - 118)
definitionCHROMAT_FILE: MSMg01no174_h15.b1 PHD_FILE: MSMg01no174_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:21 2005CHROMAT_FILE: MSMg01no174_h15.g1 PHD_FILE: MSMg01no174_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCAAAGGCACAGCCTTGAGATCAGGAAACATCAAGTCTGCCAA
GCACTGAGAATCACATAGCTATTTCAATCTTCGGCTCTTATGTCCTTTTC
TCACAGAGCAGGTCTGAGGATTATCAGATTCCCATGCTCTAAGCTGAGGA
ATTGAAAATTCAAGCCAAATGCCAAGTACCCTTTAAAAGCTTAACTACCA
CAGTGTAAGCCCAGAGCCAAAGCAGAAAGTATTGTCACCTCCAACATGCC
ATTTTCTCCTAGGATATCACTGTCTACGGTTCGAACTGTGCAGTCATTTG
TCTGCATTGGTTCTTTTGTAAGGACCGGCTCCTCCCTCTCCACACACCTG
AACCAGTGTGGTTAAGAGGAAAACCTTCCAGAGCACTGAGCCTCTATGCT
GTCTCCACATTGTACATATGGCATCCATGTATGACTCACTACAGAAGGTT
CTCAAGCTAGGATCAATACAATAGTAAGAGATCAGTCTGTGCTCAGGTGG
ATGCCAGAGCAGAGGTGCAGAAAGCCTGAATGGACACTATTAGAAACCCT
CATTGTGCAGGTATCTTCATGGCTCCCCAGTTTTCCCATGAGATGTGTCC
AGTAATCAAAGTCTTCATATCACCTATTATAGGCATAAAAATGTACACAT
TAGCTATTATCCTCTAATCAGTCTCCTTACTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACAATTACAACACATGTATGAT
GTTCAATGACATCTATACATATATACATGCAGCATACTGATATAATTCAC
TTGAAGTCAGGATTTTATACAATGCTTTCAACTTTTTTGTTTGTTTGGTT
TTTTGTTTTTTGTTTTTTTTTTTTGGTTTTTTTTNGNNNNNNNNNNNNNN
NTTTCTTTTNNNTTNNTTTNTTTTTTTTTTTTNTTTTTTTTTTTTTTTNN
TNTTCCCCCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTNNCCTNNNNNN
NNNCCTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTTCCCCCCAAAAAAAAAAAAAAAAACCTTCGT
GTGGGGGGCGGCCTCTCTCTTTTGAATTACTTTTTGTAACATCCTTTTCT
CATCCACAAACCCCACTTTCCTTTCGCTTATCCCGATACACCCCAACCCC
CTCTCTATCCTCCTTATCCTTCTCCCTTCTCCCCTTCTTCCTCCTCTTCA
CATTTTTACCACCCTCTTCTTTCCTCCATCTCTCCTCTCTATCCCACACT
CTTTCCCTTTCCTTTCTCTTCCCTATTCCCACCTTCCCCTTCTTCTCCTA
TCCTCTTTTCCCTACCCTCCCTTCCCAGTTCCTCCCCTTCCTCCCTCCGT
TTTCATTTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_h15.b1 MSMg01no174_h15.b1 CHROMAT_FILE:
MSMg01no174_h15.b1 PHD_FILE: MSMg01no174_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:21 2005
         (319 letters)



>mm_chr1_27532030_27532748
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttccaaaggcacagccttgagatcaggaaacatcaagtctgccaagcactgag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattcttccaaaggcacagccttgagatcaggaaacatcaagtctgccaagcactgag 459

                                                                       
Query: 64  aatcacatagctatttcaatcttcggctcttatgtccttttctcacagagcaggtctgag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aatcacatagctatttcaatcttcggctcttatgtccttttctcacagagcaggtctgag 399

                                                                       
Query: 124 gattatcagattcccatgctctaagctgaggaattgaaaattcaagccaaatgccaagta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gattatcagattcccatgctctaagctgaggaattgaaaattcaagccaaatgccaagta 339

                                                                       
Query: 184 ccctttaaaagcttaactaccacagtgtaagcccagagccaaagcagaaagtattgtcac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccctttaaaagcttaactaccacagtgtaagcccagagccaaagcagaaagtattgtcac 279

                                                                       
Query: 244 ctccaacatgccattttctcctaggatatcactgtctacggttcgaactgtgcagtcatt 303
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 278 ctccaacatgccattttctcctaggatatcactgtctactgttcgaactgtgcagtcatt 219

                          
Query: 304 tgtctgcattggttc 318
           |||||||||||||||
Sbjct: 218 tgtctgcattggttc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)