BAC Information

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BAC

Clone NameMSMg01-174I22
Chromosome1 (Build37)
Map Location 153,826,829 - 153,827,059
singlet/doubletsinglet
Overlap gene1700025G04Rik
Upstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3
Downstream geneLOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174I22.T7 (MSMg01no174_i22.b1)MSMg01-174I22.TJ (MSMg01no174_i22.g1)
ACCAG369819AG369820
length741725
length of high quality
(start - end)
237 (129 - 365)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no174_i22.b1 PHD_FILE: MSMg01no174_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:27 2005CHROMAT_FILE: MSMg01no174_i22.g1 PHD_FILE: MSMg01no174_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGAATAGGTCCGCATCCAAAGAGCCCATTCTTCACGTTCATGGTG
TCGAAGGTACCGCACATTTGATTTCACGCACTACGTGCGATGATGGAGGC
TGGGGAGCTCCTTGCTCTGGCATCATTCACTGTGCACATTCTTCCCAGCA
GCCCGCCTCAATCAAATCTCTAGGCAGTTATATTAATTGATTTCTCAGAG
GTTAAAATAATTAAGAGTGTATATTTATTCGGTTGCCCTGGTGCATGATG
GGTTTCGTTCATAATTTGCATATATCTTATGTTTAGATTATTTACTTATG
TGATTGAGTGCATGTACTTTCACCCATTTCTTTCCCCTTTTTTTTTAGGA
TTCTGTGTATCAATAAGTATCCTTGCAAAAAAAACAAATTTTCTAGTACT
TGGTTCATTCCTTAATGACCTCTACTGCAGCACAGGGTTCGACATAGTAT
TAGCCCCTCCTCATGCCTGCCATCTTCCATCAGGATTCTAGTGGATGTTA
GAGGCGATGGTTTTTCCTCCTCCCCCCCCCCTTCTTTTTCCCCCCCCCCT
TCCCCCTTTTCCCCCCCATTTTTACACCCTTTTCCCCCCTTTTTTTACCC
CCCTTTTCCCCCTCTTCTTTTTTTTTTCCCTTCCCCTTTTTCCCCCCCTT
TTCCCTTAATCCCCCTTTTTATTCCCCCACTTATTCATTTT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTATCTGCACCAGCCTTGTGTCTGGAA
GACTCTGCTTCCTTGGAGTCATTCACCACTTTTGGCTCTTAGAATCTTTT
ATATTTATTTATTTATTTATATTTATTTATTTTTTTAATTTTTTTGGTTT
TTCGAGACAGGGTTTCTTGGTGTAGCCCTGGCTGTCCTGGAACTCACTTT
TGTAGATCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCC
GAGTGCTAGAATTAAAGGCGTGTATTTTCACTGCCTGGCGGCTCTTAGAG
ACTTTCTGCCTCCCTTCCAGCCNNNTGCCCCCCCGGGGACAGTTTTGATA
AGTCCCCATTTAGTGCTCCNACGAAAATNCATNAAAACTCCGCCTTAGTT
GTTTGGAACAGCTCCCCCCACCCCCACCCCCGCCTCAAACTTAGACCTTT
CTAGTTTATATAGGTTGGCCAGTCAGCCCCAGGAATCCCCCTGCCTCCAT
CTCCCCATTACGTGACTGATTCCAAGTATGCCTAACCATGCTTATTTCAT
CTTGCTTTGTTTTGTTGTTTTGTTTTGAATACATTGACGGCAAGTCATAC
TTGCATGGCATACACTTTACTGAGTGTTTTCACCCGTCTCTACCTATGTG
ATCATCTTTAATATAACAAGGGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_i22.b1 MSMg01no174_i22.b1 CHROMAT_FILE:
MSMg01no174_i22.b1 PHD_FILE: MSMg01no174_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:27 2005
         (237 letters)



>mm_chr1_153826623_153827259
          Length = 637

 Score =  424 bits (219), Expect = e-123
 Identities = 228/231 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gtgcgatgatggaggctggggagctccttgctctggcatcattcactgtgcacattcttc 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgcgatgatggaggctggggagctccttgctctggcatcattcactgtgcacattcttc 378

                                                                       
Query: 67  ccagcagcccgcctcaatcaaatctctaggcagttatattaattgatttctcagaggtta 126
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagcagcccgcctcaatcaaatatctaggcagttatattaattgatttctcagaggtta 318

                                                                       
Query: 127 aaataattaagagtgtatatttattcggttgccctggtgcatgatgggtttcgttcataa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 317 aaataattaagagtgtatatttattcggttgccctggtgcatgatgggttttgttcatat 258

                                                              
Query: 187 tttgcatatatcttatgtttagattatttacttatgtgattgagtgcatgt 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tttgcatatatcttatgtttagattatttacttatgtgattgagtgcatgt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)