Query= MSMg01no174_j09.b1 MSMg01no174_j09.b1 CHROMAT_FILE:
MSMg01no174_j09.b1 PHD_FILE: MSMg01no174_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:29 2005
(334 letters)
>mm_chr1_120470269_120470998
Length = 730
Score = 524 bits (271), Expect = e-153
Identities = 306/319 (95%), Gaps = 4/319 (1%)
Strand = Plus / Plus
Query: 15 gaattctttgttcagctctgagccccaatggataccagccttttaatgaatattctggtc 74
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 215 gaattctttgtttagctctgagccccgttggataccagccttttaatgaatattctggta 274
Query: 75 catatttgattgactccactgagaaggagcctgtgcatatgaagagctgactgtatttca 134
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tatatttgattgactct-ctgagaaggagcctgtgcatatgaagagctgactgtatttca 333
Query: 135 gggaggggctatttcttagacaacattcccagaagaagatgactgacataggagcaaata 194
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 334 ggaaggggctatttcttagacaacattcccagaaga---tgactgacataggagcaaata 390
Query: 195 tcagaggtggagctgggtgtggttcagcagtagagcacttgcttagcatcttgaggcctg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcagaggtggagctgggtgtggttcagcagtagagcacttgcttagcatcttgaggcctg 450
Query: 255 ggttcaattcccaggaccatgtttgtgcacagagatcacgatccagtgccctaagtacca 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ggttcaattcccaggaccatgtttgtgcacagagatcacgatccagtgccctaagtacca 510
Query: 315 atggcactgttctagtttg 333
||| |||||| ||||||||
Sbjct: 511 atgacactgtcctagtttg 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 730
Length adjustment: 9
Effective length of query: 325
Effective length of database: 721
Effective search space: 234325
Effective search space used: 234325
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_j09.g1 MSMg01no174_j09.g1 CHROMAT_FILE:
MSMg01no174_j09.g1 PHD_FILE: MSMg01no174_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:29 2005
(338 letters)
>mm_chr1_120585468_120586206
Length = 739
Score = 567 bits (293), Expect = e-166
Identities = 328/347 (94%), Gaps = 14/347 (4%)
Strand = Plus / Minus
Query: 4 actactaataataataatttaaagtaagttttttttttaaagacaaaatctgactatgta 63
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 739 actactaataataataatttaaagtaag-tttttttttaaagacagaatctgactatgta 681
Query: 64 gaccctgcagacttgaggcttagaattctctatgtagagcaggctagcctccagctcaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaccctgcagacttgaggcttagaattctctatgtagagcaggctagcctccagctcaaa 621
Query: 124 gatcagcctgcctctgcctcccaagtactgggatttaaaggtgtgtgtcaccatgcccag 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 gatcagcctgcctctgcctcccaagtactgggatttaaaggtgtgtatcaccatgcccag 561
Query: 184 caataaatacatttttttaaataataaaataaatccatgctattccttgtgtgataggag 243
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caataaataca-ttttttaaataataaaataaatccatgctattccttgtgtgataggag 502
Query: 244 catcttctgttacagtaagatgactgttggaggcatcccagaggcatctcagatggccca 303
|||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 501 catcttctattacagtaagatgattgttggaggcatcccagaggcatcccagatggccca 442
Query: 304 tatgttggtcac------------aggatgccacagtcttgaaccag 338
|||||||||||| |||||||||||||||||||||||
Sbjct: 441 tatgttggtcacaaggatgccacaaggatgccacagtcttgaaccag 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 739
Length adjustment: 9
Effective length of query: 329
Effective length of database: 730
Effective search space: 240170
Effective search space used: 240170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
