BAC Information

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BAC

Clone NameMSMg01-174J16
Chromosome1 (Build37)
Map Location 143,563,333 - 143,563,625
singlet/doubletsinglet
Overlap genenone
Upstream geneEG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174J16.T7 (MSMg01no174_j16.b1)MSMg01-174J16.TJ (MSMg01no174_j16.g1)
ACCAG369852AG369853
length734731
length of high quality
(start - end)
315 (45 - 359)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no174_j16.b1 PHD_FILE: MSMg01no174_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:30 2005CHROMAT_FILE: MSMg01no174_j16.g1 PHD_FILE: MSMg01no174_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAAGTGTGTGGAATATTGTTCATCACTTATGATATATATGTGGGT
TTTAGTTTCTTAACTGATACACCTATGGTATTATTGAATGCAATAATAAT
ACCTATTTTAGCACATTTATAACCAGGAAAATTAAAGCAACCCTATTATT
ATTCTATGAACTGTAAAGGTTAAACAGTATGCATAAATACCATTTTAAAA
TTGCTATATTTTATATCATAGCAAATAAAAATATACATAATTGATGTTTC
CATATTTCTGAAAGAATACTTTACCTTATGTGTGCCTTTAAATATACAAA
ACCAAGATATTTTTTTTATCCCACCCCCCAAGTAATCGTAAAGTCAGCAT
AAAAGTTTTAATTCCCCCCATCCAAATGAAAGAGTTCTTATTAGAAGATA
CTAATTAATAATAACTGACAGCCTACATTACTATAAGTACCAAGTCTACA
TTTCAGAATTAATAAGACTAAGAATAAAAATTACAAACCACTATATGATA
ACCAAACGACTTTAAATGTACCTGACCTTTCCATTCTACTAACCTCATGT
TACAGACCATCTTGATGTATTCATCTGTTACATTTCTGTATTTTCCTCCC
GTTATTATCCTCCTATTTCGAATAAGATACCCCCTGCCCTTTATAATTCT
AAGCTATACCATGTCCTTCTTATCCACTCTAATT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAAGAAGAATGCCCTCTGACTCATCT
AAATAAAGCCTCTATGAACTCCCAGAGATGGAGGTGGCACAAAAGGGTCC
TCAGGGATCTACATCTTGTCATATGCAATACATATTTATTTTCAGCTTAA
TAATTTTCTGTGCCTCTGGAAACTGTAAATGAGTGGGTCTCTGATTCTCG
TGCCTGCATTTGGTGTTCCTTTTTTTTTTTTTGAGGTTATATTTTCTAAC
TTCTATGTGATGGTTTTTAATTTTATCTTACTCTACTTTCTTTTGTCATA
TTTGGTTGTTATCATTACAACCCTGTTATTTTCTAATGAGAGACATAAAG
AAAGTGGCTCTGGAGTTGAGGGGAGGTGGGGAAATGCAAAGTGTGAAGGG
AGAGGAAACTGGGATCAAGATGCATTATAAGAGGAAAGAATATAATTTAA
ATAAAAGAGAAAATTAAAGATGAAATAAAATATAAACAAGATAAACATCA
AAGGAAGCAAAGAGGTGAGTTTGATGTAGCTTAATTCATTCTATGTATTG
ATACGCGTTAATAAAATAATAAGCAAAACTTATAAAAATAATAGGTATTT
TTGTCTTATTTGACTTCCAGGGTTTTTTTTACTGTACTATTTTCATTTTA
CAAATTGTGCCTATTTTGGCTGCCATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_j16.b1 MSMg01no174_j16.b1 CHROMAT_FILE:
MSMg01no174_j16.b1 PHD_FILE: MSMg01no174_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:30 2005
         (315 letters)



>mm_chr1_143563130_143563844
          Length = 715

 Score =  453 bits (234), Expect = e-132
 Identities = 285/312 (91%), Gaps = 19/312 (6%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttaagtgtgtggaatattgttcatcacttatgatatatatgtgggttttagtt 63
           |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 204 ggaattcttaagtgtgtggaatattgttcatcgcttatgatatgtatgtgggttttagtt 263

                                                                       
Query: 64  tcttaactgatacacctatggtattattgaatgcaataataatacctattttagcacatt 123
           | |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattaactgatagagttatggtattattgaatgcaataataatacctattttagcacatt 323

                                                                       
Query: 124 tataaccaggaaaattaaagcaaccctattattattctatgaactgtaaaggttaaacag 183
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 tataaccaggaaaattaaagcaaccctattattactctatgaactgtaaaggttaaacag 383

                                                                       
Query: 184 tatgcataaataccattttaaaattgctatattttatatcatagcaaataaaaatataca 243
           |||||||||||||||||||||||||||||||||||||||||||||||       ||| ||
Sbjct: 384 tatgcataaataccattttaaaattgctatattttatatcatagcaa-------tat-ca 435

                                                                       
Query: 244 taattgatgtttccatatttctgaaagaatactttaccttatgtgtgcctttaaatatac 303
           |          |||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 436 t----------tccatatttctgaaagaatactttacct-atgtgtgtctttaaatatac 484

                       
Query: 304 aaaaccaagata 315
           ||||||||||||
Sbjct: 485 aaaaccaagata 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)