XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGATGCATTTGGGTAATGGTAGAATGAGATTGTGTAGTCTTTTAAAAAC
AGACATTGGGAGGCAAGGCCTTGAAGTATGGACTTTTCAGAATGGCTTTG
TTCTTGGCTGGTCTGTGGACAAAAACAATAATGGTAGCTACCATGACTGC
TGAGAATACTGTATATTCTGAAGATTTTAGTTGGAATATTTTATAGATGT
CTAGTAAGCCCACTTGAGCTGTGGTACTGGTTAATGCCCAAGTTTGTTGA
TGTTTTATCTGGATTGATAATTAATGGGATATCCAAATCATTTTCTCTTT
TTGTAGCTGATTTATTCCGCCCCCCCCCAGTACTGTTTTTTAGCTGAAAT
CTGGTGCCCCACCCCCCACCACATTAACAGAGATTCTGTTTTCTTGATGA
ATTACTTTTTTTATTAATGTGTATTAACTTTCTTTTAGCATGACATGTGG
TCTAATTTCTTAGGTATAAATATAACTATACATGCCTATATTTTTGCTTC
AATTTGCCCGGCCTTTATTCGCTTGTGCGTTGTCTTCTATTGTTCCCTAA
TTCCCCCCCCCCCTCTTTTTTACCTATATTTACGCCCTCACCCTTTTCCC
CGCCCTTTTATCTCCTACCCCTTCTCCTTACTCTTCCCCCCCCCCCCTTC
CTTCCTCATTCTTTTCTTTCCCCCTTTCCCCTTTATTCTCTTTTCCCCTC
T

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGCCACAACCATGACATGGTGATCCGAAGC
AGTCCTGGCCTCTATGACCCCGGACGAATCCCTCTTATCTCCCCTGCAGA
TCCACCCCATCCACAAACAGGACCAGGACGACTCACCACGCTGATTCCGT
CATTGAGCAGAGCCTCCCCGAAGATCATCATGTAAAGCTGTTCATTCACA
CGTGCCTCCTCAAAAACAGCCAGCACAGCCACGGGGTCGACCGCTGAGAT
GAGGCTGCCAAATAGCAGATTGTGTAGCAGGTTGATGTCACCAAGGCCAA
AGGCCTTGATCTGACACACGACGCAGAGAGAGAGCCCAATGCCAAAGGCA
TTGATCAGGGCTCCCAGGCCTGCCCACCACAGGATGGAGCCAATGTTCTC
AAAGAAGGGCCTGGTGGGCATGAAGTAGCCGCTTTCCAACACAATAGGTG
GGAGGAGGTAGAGGAAGTAAATGCTTGAATCCATGACCGGAGGCGATTTG
TGGTGGGTACCAAAAATGATGCCGCCCACCAGAGCTCCCACGATGATGAG
GAGGCAGCTCTCTGGCATGAGGTGGGGCAGCCTGTGGTAAAGATGGAAAT
CTGGGAACACAGAGGGTGGGACCATAATCTGTCCATGAACAGCGCTGGTT
CTAGCCAGATTGCCCTAGCCCAAGCCTCCTAATGCN

Query= MSMg01no174_l16.b1 MSMg01no174_l16.b1 CHROMAT_FILE:
MSMg01no174_l16.b1 PHD_FILE: MSMg01no174_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:40 2005
         (317 letters)



>mm_chr1_40573413_40574129
          Length = 717

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgatgcatttgggtaatggtagaatgagattgtgtagtcttttaaaaacaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgatgcatttgggtaatggtagaatgagattgtgtagtcttttaaaaacaga 263

                                                                       
Query: 64  cattgggaggcaaggccttgaagtatggacttttcagaatggctttgttcttggctggtc 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattgggaggcaagggcttgaagtatggacttttcagaatggctttgttcttggctggtc 323

                                                                       
Query: 124 tgtggacaaaaacaataatggtagctaccatgactgctgagaatactgtatattctgaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtggacaaaaacaataatggtagctaccatgactgctgagaatactgtatattctgaag 383

                                                                       
Query: 184 attttagttggaatattttatagatgtctagtaagcccacttgagctgtggtactggtta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attttagttggaatattttatagatgtctagtaagcccacttgagctgtggtactggtta 443

                                                                       
Query: 244 atgcccaagtttgttgatgttttatctggattgataattaatgggatatccaaatcattt 303
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 444 atgcccaagtttgttgatgttttatctggattgataaaaaatgggatatccaaatcattt 503

                         
Query: 304 tctctttttgtagc 317
           ||||||||||||||
Sbjct: 504 tctctttttgtagc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no174_l16.g1 MSMg01no174_l16.g1 CHROMAT_FILE:
MSMg01no174_l16.g1 PHD_FILE: MSMg01no174_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:40 2005
         (291 letters)



>mm_chr1_40640794_40641484
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggccacaaccatgacatggtgatccgaagcagtcctggcctctatgaccccggacgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aggccacaaccatgacatggtgatccgaagcagtcctggcctctatgaccccggacgaat 432

                                                                       
Query: 61  ccctcttatctcccctgcagatccaccccatccacaaacaggaccaggacgactcaccac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 431 ccctcttatctcccctgcagatccaccccatccacaaacaggaccaggacaactcaccac 372

                                                                       
Query: 121 gctgattccgtcattgagcagagcctccccgaagatcatcatgtaaagctgttcattcac 180
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gctgattccatcattgagcagggcctccccgaagatcatcatgtaaagctgttcattcac 312

                                                                       
Query: 181 acgtgcctcctcaaaaacagccagcacagccacggggtcgaccgctgagatgaggctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acgtgcctcctcaaaaacagccagcacagccacggggtcgaccgctgagatgaggctgcc 252

                                                              
Query: 241 aaatagcagattgtgtagcaggttgatgtcaccaaggccaaaggccttgat 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaatagcagattgtgtagcaggttgatgtcaccaaggccaaaggccttgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)