BAC Information

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BAC

Clone NameMSMg01-174M11
Chromosome1 (Build37)
Map Location 54,205,438 - 54,205,741
singlet/doubletsinglet
Overlap geneHecw2
Upstream gene1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174M11.T7 (MSMg01no174_m11.b1)MSMg01-174M11.TJ (MSMg01no174_m11.g1)
ACCAG369977AG369978
length717715
length of high quality
(start - end)
312 (46 - 357)229 (131 - 359)
definitionCHROMAT_FILE: MSMg01no174_m11.b1 PHD_FILE: MSMg01no174_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:43 2005CHROMAT_FILE: MSMg01no174_m11.g1 PHD_FILE: MSMg01no174_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGTAAAGTTACACTTGACATTGGACAGCCAAAATCTTGCAAACC
AATTACATCTGAGTACAGTATCCAGCCGTGTGAATGTGCCTGTTATAGCC
CTTCATGGAAAGATAAGGCGCTCCTGATGGGTCTCTAAGCAATTCACAGG
GTCTCATGTAGTGCATGGTGAACTTAAACTCTCTGTGTAACAGAAGATGA
CTTTGAATTCCTCCTGTTCCTCCCTCCACCTCCCAAGCACTGTGGTTATA
GGCGCGTGCCACTGCTTTTGACTTTCACAAGTCTTGATAGCCATGTTTGA
TAGTTGTTTATTGTCCCTGTCCTATCCCAAATAAAGGGCTGAAAATGAAA
TTGTTGTCTCCTAATGTAACCTTTGAGTTCCCTGACCAGTCACTATGTTT
TTAATGGGAGCTTGGGACCATGTAACATTTTATGGCCTTTGCTTCGGTTT
CTGGCTGAGTCTTGTTCTTGTCTGCAGTACCCTAGATCCCCTTCTCTCAT
TCTTGGTGTCTTCTCCTTTAGAGGTTCAGTTTTTATTTTCACCCCATTGT
CTCTCTTCTGTTTGATAGTTCTTTCTGCACAACTCGCATTTATTTATTTT
AATAATGGACCTTTCTGATTCCCCTAAGCATCTCATTATCTCCTGCTCCT
CTTGTGGGGACTAGCTC
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATGCCCCTGGATCTGTAAGCTC
CAAGTAAAACCTTTCTTTTATACCTTGCCCAGGTTATGCGTTTTGCCACA
GCAATAGGAAAAAAAAAGTCCTATAAGGTACTAGAGACATGGCTGGATGG
TTACAAGTGCTTATTGCTCTTGCAGAGGACCTGGGTTCAGTTCCCAGCAA
CCTTGACTTGGGGTTCTCAACCACTGTGACTCAGCGCCCTTGAGCATTTG
CACCCACATACACACATAATGTTTAGTAAACAGAACTATTCTTATGTATA
AAGAAGAGTCCTTCCNTCCCCAGACCGNACCTACTCCAGAGAGTAGCCAG
AATCCTTGAGTGGTGACAGCTCAACAAAAATGAAGCTTACGGGGGGAGCT
CTAAGCACATTATGGCCACTTTGTGGACTGCCAAGTGATCTTCATGGTAT
TAGGGTTGTAAGGCTGTAGCTTTTCAAAGCTACAATGAAGCTGGAGATGA
TATAAGTAAGCTTTAAAGCACTGTACTTCTTATATACTTATAAGCCTTTG
GTTAATTACCAGAGCGCTGAAAAAGGTAACTTTGACCGTTTCTTCCAGCA
CTCATTGGCGCTTAGAGAAGACTCTTTTTCTCTATTTGTATATTCCACTT
GATTCCATTTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_m11.b1 MSMg01no174_m11.b1 CHROMAT_FILE:
MSMg01no174_m11.b1 PHD_FILE: MSMg01no174_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:43 2005
         (312 letters)



>mm_chr1_54205392_54206103
          Length = 712

 Score =  549 bits (284), Expect = e-161
 Identities = 299/304 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggtaaagttacacttgacattggacagccaaaatcttgcaaaccaattacatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gaattcaggtaaagttacacttgacattggacagccaaaatcttgcaaaccaattacatc 291

                                                                       
Query: 65  tgagtacagtatccagccgtgtgaatgtgcctgttatagcccttcatggaaagataaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgagtacagtatccagccgtgtgaatgtgcctgttatagcccttcatggaaagataaggc 231

                                                                       
Query: 125 gctcctgatgggtctctaagcaattcacagggtctcatgtagtgcatggtgaacttaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gctcctgatgggtctctaagcaattcacagggtctcatgtagtgcatggtgaacttaaac 171

                                                                       
Query: 185 tctctgtgtaacagaagatgactttgaattcctcctgttcctccctccacctcccaagca 244
           ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 170 tctctgtgtaacagaggataactttgaattcctcctgttcctcccttcacctcccaagca 111

                                                                       
Query: 245 ctgtggttataggcgcgtgccactgcttttgactttcacaagtcttgatagccatgtttg 304
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 110 ctgtggttataggcgcgtgccactgcacttgactttcacaagtcttgatagccatgtttg 51

               
Query: 305 atag 308
           ||||
Sbjct: 50  atag 47


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)