BAC Information

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BAC

Clone NameMSMg01-174N22
Chromosome1 (Build37)
Map Location 194,658,817 - 194,659,034
singlet/doubletsinglet
Overlap genenone
Upstream gene4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat
Downstream geneA730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174N22.T7 (MSMg01no174_n22.b1)MSMg01-174N22.TJ (MSMg01no174_n22.g1)
ACCAG370040AG370041
length746734
length of high quality
(start - end)
229 (441 - 669)97 (89 - 185)
definitionCHROMAT_FILE: MSMg01no174_n22.b1 PHD_FILE: MSMg01no174_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:50 2005CHROMAT_FILE: MSMg01no174_n22.g1 PHD_FILE: MSMg01no174_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACAGGTCCTAACCACTGTGTTTATTCTCAATAAATGGTTTCTTAATAAT
CGTTTTAATTAGCAATTAGCCCGTCTTATTAAAGCTAATTAAAGGCAATT
TGGGAACCTTATTTTCATACAATCATAAAATTAGAGCAACAAGAGGCTAG
AGAGATGGGGAACATCTCCTGCTTCTATGCTGAGGGTGCAGGGAGAAGCT
GACTGATGTTCCCAATCCCGAGGCAGGCAGGCCTAAGGGGCAGGGGTGCC
CAGCCTATAAACTGAGTCCAAGTCCAAAATTTAGATGTAGCCTTGGACAG
TATGGATGTCCATTTACTCCGAGGCTTNTCTGTCCATATCTTCCAAGTGG
CATCTCAAAGACGCCCAGCCTAAAAAAAAAAACCTCTTCATCCTCCTCTC
CTCTTCATCACCCTCTCCTCTTCATCCTCCTCCCATCCCTCTTCTCTTCC
CCATTTCCTCCCTGCACTGTCTGCCTGCTCCAGAGGACATCTCAATTTTT
ACATCGAGGAAGAAGACACTCTCTTCCTCCCTCTACCACGGTACTGGCTG
CTACAGATTCCCTCACTCTTGCCCAGAGGCACAGTCTCTATCCTGCATTC
CTTCCCACCATTGTGGGGTGACTGCACTGTGTCATAAGCTTTCCAGGCGG
GTGGAAGCTCTTGGAATTGGCTTTGCGCCCTCCAAACTTTGGCCTA
ATCCNNCTTTAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATCTCCATTC
CTGATGGTGCTACAGAAAGGAGCCATACTTTGAGGTCATGTGCCATCACT
AAGCCACCAGGAATCTAAATCATAANTCTCAAATGGCAGAACCTAAAATC
ATTTTTCATAATTCAAAGAAGTGAACCTCCGGGAAGCCCAACCCAGGGTT
GTGAAGAAAAAGAATACCGCAAGCCCACCCCAAGGTCCGGAAATGCCCGT
TGGAAAAAATTGGGAAGGAAATTTCTCTAAAAGGGGGGGAAAAAAGGAAA
GGGCCCTTTTTTCCCCCGGGGGGAGAACCCTTCAAAAATGTGGAGGTTTT
TTTTGGGGCGAAAAAAGGGGGGGAAAACCCCCCCCCATTTTTTGGGGAAA
AAAAATTTTTTTTTTTTTTTTGCCCCCCCCCCCCCCCCCCAGAGAAAAAT
ATAAAAATTTTTTTTTTTTTAAAAAAAAAATTTTTTTTTTTTTTCCCCCC
CCCGGGAGAAAAGAAAAAATAATAATATATTTCTTCCCTCCAAAAAAAAA
ACGGCTACCCCCCCCATAAAGAATGCGGGGCGCTCCCCCTCACAAAAAAA
AAAAAAATAACGAGGTTATTTTTTTTCTACTTCGCTGGGTGGTCTTCTCT
TTACTTTTTTTCCCTATTTTTTCAGGGAGGGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_n22.b1 MSMg01no174_n22.b1 CHROMAT_FILE:
MSMg01no174_n22.b1 PHD_FILE: MSMg01no174_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:50 2005
         (229 letters)



>mm_chr1_194658546_194659174
          Length = 629

 Score =  356 bits (184), Expect = e-103
 Identities = 211/224 (94%), Gaps = 9/224 (4%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcctcttcatcaccctctcctcttcatcct---cctcccatccctcttctcttccccatt 65
           |||||||||||     ||||||  ||||||   || ||||||||||||||||||||||||
Sbjct: 489 tcctcttcatc-----ctcctc-ccatcctaccccacccatccctcttctcttccccatt 436

                                                                       
Query: 66  tcctccctgcactgtctgcctgctccagaggacatctcaatttttacatcgaggaagaag 125
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcctccctgcactgtctgtctgctccagaggacatctcaatttttacatcgaggaagaag 376

                                                                       
Query: 126 acactctcttcctccctctaccacggtactggctgctacagattccctcactcttgccca 185
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 375 acactctcttcctccctctaccatggtactggctgctacagattccctcactcttgccca 316

                                                       
Query: 186 gaggcacagtctctatcctgcattccttcccaccattgtggggt 229
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaggcacagtctctatcctgcattccttcccaccattgtggggt 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)