Query= MSMg01no174_p17.b1 MSMg01no174_p17.b1 CHROMAT_FILE:
MSMg01no174_p17.b1 PHD_FILE: MSMg01no174_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:57 2005
(321 letters)
>mm_chr1_111479557_111480277
Length = 721
Score = 567 bits (293), Expect = e-166
Identities = 311/317 (98%)
Strand = Plus / Minus
Query: 5 gaattctaaagatgtgtggaaaagcttataggtcataatgataagactaaagatgttctt 64
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 521 gaatcctaaagatgtgtggaaaagcctataggtcataatgataagactaaagatgtcctt 462
Query: 65 attcagagttctacatttcaggtgttaagcccaggtcaaacatacttagattctgtgaaa 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 attcagaggtctacatttcaggtgttaagcccaggtcaaacatacttagattctgtgaaa 402
Query: 125 atattaattgcttggcataatgtcagtgaagttcaaatatcaaccctattttggcacact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 401 atattaattgcttggcataatgtcagtgaagttcaaatatcaaccctattttggcgcact 342
Query: 185 ctagagtaaggttgtgtataaggcatggatctattaggtgaaaattaagatggattaagt 244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 341 ctagagtaaggttgtgtataaggcatggatctattatgtgaaaattaagatggattaagt 282
Query: 245 cataaccaaaggatggacagtaagataattttttttaccataacattcaaagaagccatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cataaccaaaggatggacagtaagataattttttttaccataacattcaaagaagccatt 222
Query: 305 atgctagaataagcagt 321
|||||||||||||||||
Sbjct: 221 atgctagaataagcagt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_p17.g1 MSMg01no174_p17.g1 CHROMAT_FILE:
MSMg01no174_p17.g1 PHD_FILE: MSMg01no174_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:58 2005
(664 letters)
>mm_chr1_111328970_111330033
Length = 1064
Score = 1220 bits (631), Expect = 0.0
Identities = 658/669 (98%), Gaps = 5/669 (0%)
Strand = Plus / Plus
Query: 1 agattaatggtgatattcttatgtgtcattctgaaaaaataaatgtgttacttagtgctt 60
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 201 agattaatggtgatattcttatgtgtcattatgaaaaaataaatgtgttatttagtgctt 260
Query: 61 ttatcaacctaaattcaaactagtaactgaagagaaaaatatgacttgaactggacaatt 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ttatcaacctaaattcaaactagtaactgaagagaaaaatataacttgaactggacaatt 320
Query: 121 tcctctatcagaatctcctgtgtgcatgactctgggagcacttttctttattaatgattg 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttctatcagaatctcctgtgtgcatgactctgggagcacttttctttattaatgattg 380
Query: 181 atgggcatggcccatcccaccatggtgacatccttggatatgtggtcctggactgcatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgggcatggcccatcccaccatggtgacatccttggatatgtggtcctggactgcatat 440
Query: 241 aaaagtctgctgagcaaaccatggaaaacatgccagtaaatagtattttccatcagtctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagtctgctgagcaaaccatggaaaacatgccagtaaatagtattttccatcagtctc 500
Query: 301 ttctattgagcttgtatttaggtttctgcctcaacttcctttcataatgtaatgttattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctattgagcttgtatttaggtttctgcctcaacttcctttcataatgtaatgttattt 560
Query: 361 gaagtacaaactaaaataagtatcttcttccccaacttaattttgatcagggtttgaact 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagtacaaactaaaataagtattttcttccccaacttaattttgatcagggtttgaact 620
Query: 421 ttgctaagtgtccatggagctccctaactttctggtcttcaatgcattaccttgaatttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgctaagtgtccatggagctccctaactttctggtcttcaatgcattaccttgaatttc 680
Query: 481 agtgacatacataaggactgtgcttcaaaactaatatagacaacaagaagagggaacaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgacatacataaggactgtgcttcaaaactaatatagacaacaagaagagggaacaaa 740
Query: 541 ctacattgagtt-ttttttttttttt----gagacagggtttctctgtgtactgttggct 595
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 ctacattgagttcttttttttttttttcttgagacagggtttctctgtgtactgttggct 800
Query: 596 gtcttggcactcactctgtataccaggctggccttaaactcagaaatccacctgcttctg 655
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtcttggcattcactctgtataccaggctggccttaaactcagaaatccacctgcttctg 860
Query: 656 cctcccaag 664
|||||||||
Sbjct: 861 cctcccaag 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
