TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGGCTGATTCTTGCAGCTTCTGCTGTGAGCACTTTGACACAACAGTGAG
CACTGTGTGCAGATGCAGCGGAGCCTTGCAGTTTCTGCTGGACTGAGTCA
CTGCTACTGACTCCTGTGTTTGCTATTGGACTGGACAACAAAGAGTCGAA
TTGCCCTCCTCCCGAAGAACTACTTCTAAACAGGTCCACAATCCCCTTTT
CCTATAAGCCTTCATTTTCCTCTACCTCTGCTCGCTGGGCTAGAAGGGAG
GTTGAAGCATTCTAGAACCCTAAGTAAATTATGTTTTGGAGAATCTAAGA
ATGCACATCTTTCTTGCCACCCTCCCGCCCATTTAACCCTGACTCGGTAA
CCCCCTGCCACACACAAATGCACAACTGGTTGTGTTATGGCTTCTGCAAA
CTGTTAATGAAGACATTCAAGTTGCCTTGACTACCTAATCTTGGTAAAGC
AAAACAGCTTAAAACTTGCTTCTGCAGATACTCAAGATCTCATGAGTTTT
GCCTTTAAAAATCCTTCCCTCGCCCCCAACTCAAGTTTGGCTTAGAGATT
GTTGTCCTGATAGTAGTAATCCGTAACTCCTTTAATTATTATTGGATTGA
ATCTATGGTCTTTTCCTTGGGTTCAGAAACTCCATAACACACACACACAC
ACACACACACACACATACACATTATCCGAGA

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGAGAGTCTTTCTCTGAGGATATT
TGCTTTTTAAAAAGCTATCATTTCCTTCTGACAAGAGCCTGATTTAATTA
ACTGTGGGCTTTCTGAACAGAATCCTGCAGTTAGCTCTAACCCCCAACCT
ACAAGAGCTCTCCATGAGTAGGCACTTTGGGAGAAGAAACAAAACAAAAC
AAACCCAGAAGGCTTACTTGAATATGGGTGTGTGGTTACTGCTGACTTTG
ATAGGAGTAGCCTGTTTCTGGGAACTAGGATCGGAGTTGCTGGGAAAATA
GGACAGAAGCAAAGGAAATAAAAGCATCCACTGGGCATCTTGTTCAAAGT
TGCATGAGCAACTACCGCGCAGAAGTGATGAGTTAAAATCCAAATTTCTC
TCATTAAGACCATTGTCTCAGCAAATGACCTAGCGCTGTGACCTTCTCAT
TGCATGCTGATCCCTGGAGAAGAAAGCAGAACGAGCAAGTGCTGGTGTCA
ACATTGTTTGTTGACTGGCAAGAGGAAAGTCAAAGATAGCAAAAGAGACT
GGAAAGATGTATCTCCCTTCTGGTTTGTGCACATGCACACACACACACAC
ACACACACACACACACACACACACACCAGAAGTTCAGCAAGTAGGCATGG
AAAATAATCTCATTGGCATCA

Query= MSMg01no175_a19.g1 MSMg01no175_a19.g1 CHROMAT_FILE:
MSMg01no175_a19.g1 PHD_FILE: MSMg01no175_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:03 2005
         (646 letters)



>mm_chr1_16227488_16228532
          Length = 1045

 Score = 1168 bits (604), Expect = 0.0
 Identities = 631/646 (97%), Gaps = 11/646 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagagtctttctctgaggatatttgctttttaaaaagctatcatttccttctgacaag 60
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 753 aggagagtctttctctgaagatatttgcttttt-aaaagctatcatttccttctgacaag 695

                                                                       
Query: 61  agcctgatttaattaactgtgggctttctgaacagaatcctgcagttagctctaaccccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agcctgatttaattaactgtgggctttctgaacagaatcctgcagttagctctaaccccc 635

                                                                       
Query: 121 aacctacaagagctctccatgagtaggcactttgggagaagaaacaaaacaaaacaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aacctacaagagctctccatgagtaggcactttgggagaagaaacaaaacaaaacaaacc 575

                                                                       
Query: 181 cagaaggcttacttgaatatgggtgtgtggttactgctgactttgataggagtagcctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cagaaggcttacttgaatatgggtgtgtggttactgctgactttgataggagtagcctgt 515

                                                                       
Query: 241 ttctgggaactaggatcggagttgctgggaaaataggacagaagcaaaggaaataaaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttctgggaactaggatcggagttgctgggaaaataggacagaagcaaaggaaataaaagc 455

                                                                       
Query: 301 atccactgggcatcttgttcaaagttgcatgagcaactaccgcgcagaagtgatgagtta 360
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 454 atccactgggcatcttgttcaaagttgcatgagcaactactgtgcagaagtgatgagtta 395

                                                                       
Query: 361 aaatccaaatttctctcattaagaccattgtctcagcaaatgacctagcgctgtgacctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaatccaaatttctctcattaagaccattgtctcagcaaatgacctagcgctgtgacctt 335

                                                                       
Query: 421 ctcattgcatgctgatccctggagaagaaagcagaacgagcaagtgctggtgtcaacatt 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 334 ctcattgcatgctgatccctggagaagaaagcagaaagagcaagtgctggtgtcaacatt 275

                                                                       
Query: 481 gtttgttgactggcaagaggaaagtcaaagatagcaaaagagactggaaagatgtatctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtttgttgactggcaagaggaaagtcaaagatagcaaaagagactggaaagatgtatctc 215

                                                                       
Query: 541 ccttctggtttgtgcacatgcacacacacacacacacacacacacacacacacacacaca 600
           ||||||||||||||||||||          ||||||||||||||||||||||||||||||
Sbjct: 214 ccttctggtttgtgcacatg----------cacacacacacacacacacacacacacaca 165

                                                         
Query: 601 ccagaagttcagcaagtaggcatggaaaataatctcattggcatca 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ccagaagttcagcaagtaggcatggaaaataatctcattggcatca 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1045
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1035
Effective search space:   658260
Effective search space used:   658260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)