BAC Information

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BAC

Clone NameMSMg01-175C17
Chromosome1 (Build37)
Map Location 127,799,664 - 127,799,976
singlet/doubletsinglet
Overlap geneLypd1
Upstream geneActr3, Slc35f5
Downstream geneE030049G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175C17.T7 (MSMg01no175_c17.b1)MSMg01-175C17.TJ (MSMg01no175_c17.g1)
ACCAG370241AG370242
length743704
length of high quality
(start - end)
319 (40 - 358)208 (92 - 299)
definitionCHROMAT_FILE: MSMg01no175_c17.b1 PHD_FILE: MSMg01no175_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:11 2005CHROMAT_FILE: MSMg01no175_c17.g1 PHD_FILE: MSMg01no175_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AACATAATAGCAAGCTTGCTAGGAAGGCTTCCATGACTATCTGAGTGAAG
GGAGCCTGTCCTACGAGCACTGATATTTCACCCCTTTTCCTTCTGGGGTG
CTAAAGAAACACCTTTCTCTCTGGGACAAGACGTTCTGCCATTCAGCTTA
CCCAATGTGCAATCCAGATCCACCCACCTTGTTAATGCAGTAGGCAGAGC
TAGCTTCTGGGGGAGATTTGAGAGAGACTATCACAGCCCTTTTGTCCCTG
GGACTCTCCAATAAGCGAAGCATTTGTTTATGTTAAGTTTCCAACTGAAC
AGGCAGTTCGTGCTGACCCNNCCTNTCACCAGATGAAAGGCTTGAAGATT
GATCCAGCTCTCCCCACAACGAAAATAACTCCCACTACGGTTTCTTGAAA
GCTTCCTTCATTGATGGTTTTCCTAATGAGTTTAAACAGGGAGGCTTCAA
AGCTGGGGCTCTTTTCCCAAGTGGAAAGAAGATGAAGTATGAAAACAAAC
TACACCGCTTTCTTTGAAGTACGAAAGGGATATTGGTTTCCCTGTGTGTT
CCCCGCAAAGCCCAACTCCACGTCCTTCTGGATTGTGGATCCCTCCTTCC
TTCCCTTCATTCTTTTCTTAATTCAAAGAACTTTTTTTTGCTAACTTGGG
TTCCAATTCCCAATTGGGCAAAAGTTTTAGTCTGGTATACAAN
CCTTTCCCTTNNNNNCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGTACAG
CCTTATCTCTGCTTCGTGGCTGGATGTAGCATGACCAATAGCTTCTTGTT
CCTCTGCCATGCCTGTCCTATGATGAACTGTGTACCCTCAAACTGTGAGC
CAAAGTAGGCCACTTCCCCTTAACTTACTCTCTGTGAGGTGTTTGGTCAG
AGTACCAAGAAAAGACACTCATACAGCTGGCTTCCTCTGCTTCTTTCTCC
CGGAGAAAATTTCCTGACCAGGGATGCTTCCCATGATCATCCCTGCTTTC
TCATTTTTGCTGAAATGACCCCTTTGGAATTCCCAAAAGAAAAAAAAACC
ATTCTTGGAAAAGGGTTTTCCTAAAATAATATGTCCACGGGGGAAAAAAA
TGGCCACAAAAAAGGGGGGGGTACCAAAGAGTTTTTTTTTTTCTGGGGGG
AAAAAAATTTTTTTTTTTAAAAAACACCACCACAAATAGCGTGGCTCCCC
CTCCCCCCCCCCCATAAAAAATATATTGGGGGGGGGAAGAAAAAAAAAAA
AAAATTTTTTTCTTTCTTTTTCTCCCTCCCACCCCCACCTTTCTTCAATA
TATATTTTTTTTTTTCNTTTTTTTTTTTTTGTATAGTTTAACCCACATTT
ATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_c17.b1 MSMg01no175_c17.b1 CHROMAT_FILE:
MSMg01no175_c17.b1 PHD_FILE: MSMg01no175_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:11 2005
         (319 letters)



>mm_chr1_127799460_127800178
          Length = 719

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaacataatagcaagcttgctaggaaggcttccatgactatctgagtgaaggga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattccaacataatagcaagcttgctaggaaggcttccatgactatctgagtgaaggga 458

                                                                       
Query: 65  gcctgtcctacgagcactgatatttcaccccttttccttctggggtgctaaagaaacacc 124
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 457 gcctgtcctacgagcactgatattccacctcttttccttctggggtgctaaagaaacacc 398

                                                                       
Query: 125 tttctctctgggacaagacgttctgccattcagcttacccaatgtgcaatccagatccac 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tttctctctgggacaagatgttctgccattcagcttacccaatgtgcaatccagatccac 338

                                                                       
Query: 185 ccaccttgttaatgcagtaggcagagctagcttctgggggagatttgagagagactatca 244
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ccttcttgttaatgcagtaggcagagctagcttctgggggagatttgagagagactatca 278

                                                                       
Query: 245 cagcccttttgtccctgggactctccaataagcgaagcatttgtttatgttaagtttcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cagcccttttgtccctgggactctccaataagcgaagcatttgtttatgttaagtttcca 218

                        
Query: 305 actgaacaggcag 317
           |||||||||||||
Sbjct: 217 actgaacaggcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)