BAC Information

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BAC

Clone NameMSMg01-175E10
Chromosome1 (Build37)
Map Location 136,690,414 - 136,690,704
singlet/doubletsinglet
Overlap genePpp1r12b
Upstream geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2
Downstream geneUbe2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175E10.T7 (MSMg01no175_e10.b1)MSMg01-175E10.TJ (MSMg01no175_e10.g1)
ACCAG370314AG370315
length759743
length of high quality
(start - end)
285 (65 - 349)288 (70 - 357)
definitionCHROMAT_FILE: MSMg01no175_e10.b1 PHD_FILE: MSMg01no175_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:19 2005CHROMAT_FILE: MSMg01no175_e10.g1 PHD_FILE: MSMg01no175_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GCTTTTCACGCTGAGAAGCCTGGGAGCACTCATGAGGCATAGAGTTTCAC
GGAAACTCACCTCCTCCAGCTTTGGCATTCTCATTAACCCTTATACTCAT
ACCCTATCCCCGTGTTAGTCTGGTGTATGGATCCAAGTGATTTCTTTTAG
TATTATCTTATTATAAGTGTCTTATAAGATTGAATTCTGACATAGCCAGA
GCCTTTGCCAGTGTTCCAAGGTTCCAGAAGCTGACGAGCTTGGAATCTGG
CAGGAATGCATTATTGAAGTTGCCTATTCAGTAACTAATTAAGCATTACA
AAAGATGGAGCCAGCACCTCAGGGCTGGTCTGAAAAGTATTTACTAAGGA
CAGTACCACCCCTCACCCAAGCAAGGGAATACCATAATAGAGCTAGGGAA
TCCCACTGAGACAGGGATCTTCTCTACAGCCAGTTATAGCAAGCTTCATA
TTATAAGCAAGTTGGTGAATTCTTCTGAAGACCCGGGAAATAGGGGGGTT
GTGGTATTGCAGTATTTTAGATAAGGTCTGCTAAGTGTCAAAACCCTGGT
TGGTGGGCTCTATATATAAAACTAATTTTACCTCTTGGTCTCCCTTTCCT
TAGTGTTAGTTGTCCCTGGTTCCTCCCCCTTTCTTTCGTTGTTATACTTT
TCTCCTTTTGTTTTTGTTCATATGTATTTGTTTCCCTGCTCTTGGCATCT
CTTTTGCCC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGGTTTGAAGGCAGAGTTGGGGGGAGCAC
CCTCATAGAAGCAGGCCCAGAGAGCATAGGATTCTGGAGGGGAGACCTGG
AAAGCGCATAACATTTGAAATGCAAATAAAGAAAATATCCAATAAAAAAT
ATCCAGTAAAAGTTCCTGGCCAAATCAGGACATATGTGAGCTAATCAACA
GCCCCAAATCTGGGGAGAAAATTTCTTCAAAGGCTTTTAAACCTGCCTCA
AGAAGAAAGGGCTTTTAGCTCTCCACCCCAACCTCTGTGCTTTGCAATGG
GTTTTTGTCTCTGGACCCCCGCTCCCTACTGGTGTTCTGTCCCTTCCCCT
TCAAGTGCCGCCCCTTCTTCAAAGAATGAATTTCTCCACTGCCTCCTGAT
GTACTTTAGTTTTGTCTGCCCTTTAATTGTCCAAGTGACAGAGAGTATGA
ATCTGGTTGAGAGCCCTGACTGCATCAAAACTAGTTTATCCATCACACCC
TTTGTTCCAATGTTCCTGAGCTCAAGTTGTTTATTTTATTTTATTGTTTG
TTTTATGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCTC
TTTGTAGACCAAGCTGGCCCTCGAACTCCAAAATCCTCTTGTCTTCTACC
CTCCCGAGGTGCCGGTAATTAAAGGTATGCCTCTATCCACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_e10.g1 MSMg01no175_e10.g1 CHROMAT_FILE:
MSMg01no175_e10.g1 PHD_FILE: MSMg01no175_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:19 2005
         (288 letters)



>mm_chr1_136690217_136690904
          Length = 688

 Score =  439 bits (227), Expect = e-128
 Identities = 272/291 (93%), Gaps = 7/291 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtttgaaggcagagttggggggagcaccctcatagaagcaggcccagagagcatagga-- 62
           ||||||||||||||||| |||||||||||||| |||||||||   ||||||||| |||  
Sbjct: 198 gtttgaaggcagagttgtggggagcaccctcagagaagcaggggaagagagcatgggata 257

                                                                       
Query: 63  -----ttctggaggggagacctggaaagcgcataacatttgaaatgcaaataaagaaaat 117
                |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 258 ggggtttctggaggggagacctggaaagcacataacatttgaaatgcaaataaagaaaat 317

                                                                       
Query: 118 atccaataaaaaatatccagtaaaagttcctggccaaatcaggacatatgtgagctaatc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 318 atccaataaaaaatatccagtaaaagttcctggccaaatcaggacatatgtgagccaatc 377

                                                                       
Query: 178 aacagccccaaatctggggagaaaatttcttcaaaggcttttaaacctgcctcaagaaga 237
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aacagcctcaaatctggggagaaaatttcttcaaaggcttttaaacctgcctcaagaaga 437

                                                              
Query: 238 aagggcttttagctctccaccccaacctctgtgctttgcaatgggtttttg 288
           ||||||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct: 438 aagggcttttagctctccaccacaacctctgtgctttgcaacgggtgtttg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)