BAC Information

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BAC

Clone NameMSMg01-175H20
Chromosome1 (Build37)
Map Location 94,174,833 - 94,175,124
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175H20.T7 (MSMg01no175_h20.b1)MSMg01-175H20.TJ (MSMg01no175_h20.g1)
ACCAG370465AG370466
length755716
length of high quality
(start - end)
292 (135 - 426)49 (91 - 139)
definitionCHROMAT_FILE: MSMg01no175_h20.b1 PHD_FILE: MSMg01no175_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:34 2005CHROMAT_FILE: MSMg01no175_h20.g1 PHD_FILE: MSMg01no175_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTTCCTTCTTTTTNTCNNTTCTTGNTTTACCTNAACCCCCACCGNNCN
CCNGCGCAANNNNNNNAAATCTATAATTTGCGGAGAATATACGACTCACT
TCAAAAAGAGGATCCGCGGAATTCAAATTCCCACGCCTATGGGGGCCATT
CTTATTCAAACCACCACAAGGAGACTCACTGTTGTCATTGAAGCCAAGAG
GAGGTTTCTCCCAAGGCCAAGCCATGGTGTTGTCTCCTGTCTGACCAGAT
CCATTTTCCTGGGATATTAGAACAGGAGTCCTACTGAGAACTAGCTGGAC
TTTCTTTCCATGTAATGAGGGGGGGACAAAACAGCAGTCAGACTCGTGGA
TCCCCAAGAAAGAAGACGAGACTGTCTGCCAAGAGGAGATGAAATTATGT
GAAAGCAAGCACTCGGATCAGGGGACACCCAGGCCTCCGGAGTCTGAAAG
GAGGGGAGATCGACTTCTCTGAAGTTGGAGGGTCCCCTCGAGGAGGCAAG
GAGGTGTGGACACCCTGTAAGGAATGGGCTGTGCACAGGGCATCCAATGC
AGCTAGAGAAAGATGCTGGCCAAGCGAGGAGACAAAGTGGTATGAGAACC
TCCAGGCAACTAGGAGAATAGTCGAACTATTCAAAGGCATGAAAATGAGG
CACCTGTCCATACAACAGGAGTCCAGGCTCCAGGAACTCTTGTCTGTCAA
AATTGATGTCAGCATCAACAGGTGCCTTTGTAAGAGAGAAAGTTGAAAAG
CAAGN
CTCTTCTNNNCCCACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGTCCAG
GATGTAAAGCATGTTCTGAAAGAAAAGCTATGGCCCTAGAGGTGCACTGC
CCCTTGGCACCCCAAACTCCTTGTGCCAGCATGTGGCTGTGGAAACATGA
AAGGCAGGCTTTGGGCTCTGAAAAAGCCCAACAGAACCATTCTGAAGTAA
AGACAGGCCTCTGCCAAAAGGATGAAGCAGGCTGGCTTGGACAGTACCCT
GGGCCAGCTTAGTCTCCACACTCATTGACAAGGAAGACAGAAACACATTC
AGGCAAATGTTGAGAGAACAGTTTTTTTACCACAACCTCGTTTTATAATA
GATCTGCTAGTCATTCCCGCCTAGAGAAGGAGAAGGGAATAAAGGTGACA
AGAACAACCCTGGGTATATATACTTCCCAACAGCTAGGCCAGTGGGTAGG
GCATTACAAAACCTGAGCAGGGTCAAGCCAAAGATCACTGTGAGGTTGAG
ACCAGCCAAACCAAAGTCAGGATCCCTGCGGAAACTCAAGGGGGCTGGGG
TTTGCAACACTCCGGGACCCTGTTGTAAAAAATTGTTATGGCTGGCCACG
TGCCCAATTGCCATATAACCTGAGAGCCAACCCTGAGGATCCCAATGCAG
TCATGCCTACAGTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_h20.b1 MSMg01no175_h20.b1 CHROMAT_FILE:
MSMg01no175_h20.b1 PHD_FILE: MSMg01no175_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:34 2005
         (292 letters)



>mm_chr1_94174599_94175290
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctatgggggccattcttattcaaaccaccacaaggagactcactgttgtcattgaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gcctatgggggccattcttattcaaaccaccacaaggagactcactgttgtcattgaagc 467

                                                                       
Query: 61  caagaggaggtttctcccaaggccaagccatggtgttgtctcctgtctgaccagatccat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 466 caagaggaggtttctcccaaggccaagccatggtgttgtctcctgtctgagcagatccat 407

                                                                       
Query: 121 tttcctgggatattagaacaggagtcctactgagaactagctggactttctttccatgta 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tttcatgggatattagaacaggagtcctactgagaactagctggactttctttccatgta 347

                                                                       
Query: 181 atgagggggggacaaaacagcagtcagactcgtggatccccaagaaagaagacgagactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 346 atgagggggggacaaaacagcagtcagactcgtggatccccaagaaagaagacgagagtg 287

                                                               
Query: 241 tctgccaagaggagatgaaattatgtgaaagcaagcactcggatcaggggac 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tctgccaagaggagatgaaattatgtgaaagcaagcactcggatcaggggac 235


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)