BAC Information

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BAC

Clone NameMSMg01-175M12
Chromosome1 (Build37)
Map Location 32,134,275 - 32,134,578
singlet/doubletsinglet
Overlap genenone
Upstream gene4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056, LOC100041238
Downstream geneKhdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175M12.T7 (MSMg01no175_m12.b1)MSMg01-175M12.TJ (MSMg01no175_m12.g1)
ACCAG370672AG370673
length736730
length of high quality
(start - end)
311 (40 - 350)296 (70 - 365)
definitionCHROMAT_FILE: MSMg01no175_m12.b1 PHD_FILE: MSMg01no175_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:56 2005CHROMAT_FILE: MSMg01no175_m12.g1 PHD_FILE: MSMg01no175_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TCCCTTTCATGATATGGAGATGACTGGAATGTTAGAAAAGGTGCTATGCT
TTTTAGTTTTGTCAACTTGGTATAAACTAGATTCATTTGGTAAGAGGAGA
CCTCAACTGAGGAGTTGTTTCCATCTTTACATCTTTGGCATGTAATCATA
TCAATGAGAGAATTTTCTTGATTAATAGTTTATGTGGGGTACTATATCAC
CTTACTGTTTTCTACCCGAAATCCCCATTGTTGATAATGGACCATTCCTT
CATCAGGATACAATAATCCATTTCCAGCCTCATTTCTCTCAGCTCTCATT
ATTTTTTGCAGCCTCCCCCCAGCAATTTAGTATGGTGCAACCTCTTCGGT
GCCACTCCTTATAAAATTATAAGATGTTATGTACCATTTGTGTCTAGTGA
TGGCAGAGCTCTCAAGGTTGCCACCAGAAAACTAATGTTTGGCCACTTGG
CAATAAGAAAGCCGGCCATATTCTTCTAAGCCATTGGTGCAGCAATGACT
AGTTGCCAATCTATAAAGTTAAGAAAATATTTCAAAGCTGAAAGTGGTAC
CTTCTTCCTTACTTTTGATCAAACCTTTAAAAACATTTTCCCTTGTTCAA
CTCATTGCATGGTTTCTTTTTAAAGACTTTACTTTGGGATGACATAAACT
TTTTAAATTTACTAAATTTAAGTATTTCCTAAGCAT
ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTAAGGTAATTGAAAGT
TTTGCTGGGTATTATAGTCTATGCTGGCATTTGTGTTCTTTTAGTGTCTG
AATAACATCTGTCAAGGATCTTCTGGCTTTCATAGTCTCTGGTGAAAAGT
CTGGAGTAATTCTGATAGCCCTACTTTTATATTTTATTTGACCTTTTTCA
CTTACTGCTTTTAATATTCTATCTTTATTTAGTGCATTTGTTGTTCTGAT
TATTATGTGTCGTGAGGAATTTCTTTTCTGATCCAGTCTATTTGGAGTTC
TGTATGTTTCTTGCATGCTCACGGGCACCTCCTTTTCTTTAGTTTTGGGA
AGTTTTCCCCCATAATTTTGTTGAAGATATTTGCTGGCCCTTTAAATTGA
AAATCTTCATTCTCATCTACTCCTATTATCCATAGGTTTGGTCTTCTCAT
TGTGTCCTGGATTTCCTGAATGTTTTGAGTTAGGATCTTTTTGCATTTTC
CATTTTCTTTGATTGTTGTGCTGATGTTCTCTATGGAATCTTCTGCACCT
GAGATTCTCTCTTTCATCTCTTGTATTCTGTTGCTGATGCTTGCATCTAT
GGTTCCAGATTTCTTTCCTAGGTTTTCTATCTCTAGCGTTGCCTTCACTT
TGAGTTTTCTTTGTTGTGCCTACTCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_m12.b1 MSMg01no175_m12.b1 CHROMAT_FILE:
MSMg01no175_m12.b1 PHD_FILE: MSMg01no175_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:56 2005
         (311 letters)



>mm_chr1_32133876_32134586
          Length = 711

 Score =  578 bits (299), Expect = e-169
 Identities = 304/307 (99%), Gaps = 3/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccctttcatgatatggagatgactggaatgttagaaaaggtgctatgctttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaattcttccctttcatgatatggagatgactggaatgttagaaaaggtgctatgctttt 644

                                                                       
Query: 65  tagttttgtcaacttggtataaactagattcatttggtaagaggagacctcaactgagga 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 643 tagttttgtcaacttggtataaactagattcatttggtaagaggagacctcaact---ga 587

                                                                       
Query: 125 gttgtttccatctttacatctttggcatgtaatcatatcaatgagagaattttcttgatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gttgtttccatctttacatctttggcatgtaatcatatcaatgagagaattttcttgatt 527

                                                                       
Query: 185 aatagtttatgtggggtactatatcaccttactgttttctacccgaaatccccattgttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aatagtttatgtggggtactatatcaccttactgttttctacccgaaatccccattgttg 467

                                                                       
Query: 245 ataatggaccattccttcatcaggatacaataatccatttccagcctcatttctctcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ataatggaccattccttcatcaggatacaataatccatttccagcctcatttctctcagc 407

                  
Query: 305 tctcatt 311
           |||||||
Sbjct: 406 tctcatt 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)