BAC Information

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BAC

Clone NameMSMg01-175O08
Chromosome1 (Build37)
Map Location 114,919,814 - 114,920,098
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626897, LOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175O08.T7 (MSMg01no175_o08.b1)MSMg01-175O08.TJ (MSMg01no175_o08.g1)
ACCAG370753AG370754
length725729
length of high quality
(start - end)
285 (123 - 407)284 (72 - 355)
definitionCHROMAT_FILE: MSMg01no175_o08.b1 PHD_FILE: MSMg01no175_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:04 2005CHROMAT_FILE: MSMg01no175_o08.g1 PHD_FILE: MSMg01no175_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGAAGATTTCCTGAGGAAATTGATTCTTTCCTTCCACCTCATAGGTTTCA
GAGATTGAACAAATTTACCGAGATAAACATCTTCGCCAGGAGAGACATCT
CACCAGCTCAATATTTTCCCTTTTAGTTGACTTAAACATTAGTTGACCTG
ACATTCAAATCATATTTTAGTTGGTGCTAGGCCTACACTGGCACCTGTAG
GTTAAGAAATATCCATCAACATCATGTTATAGTTGTCTGAGATTGACACC
TATGACATTGTTATCTTATTCCATTGTGTATTCTTGTGGAAGATTAAATG
ACCTCAGTATAGTCTGTCATGTCTTGGCCTCAGATATTTTCTCTGTCCTT
TAGAAATTACCCCCCAGTCTTCTAGGCCTGTCAGAATACTCACAAAAGCT
TTCCAACATGGGTGCTTTTCATTACACTCATCTACTACAGCTCACTGTGC
TCATGACTCCCAGGTTAGTCATTCCAAGACAGTGATTTGCTTACAATTGT
GAGTAGTTAAAAAGGCAAGCATATGTAACATGAGCACTTACAGAAACTGT
CCTCCTTTCCTTTCTGTTGCTATAATAAAATACCCCAGCAACATAAAACT
TACGAGACTTAAAAGGTTTTTGGGAGGCTTCATTTCCAGTGCCATGGTCA
TCATTTTTGTATAAACAGAATAGGA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTGGATGCTTTGGGTTAAGATTTTCTAT
ATTTTGAATTATTTTTTTCACAGTTGTGTCAGTCTCTTCTAAGGTATCTT
CTATACCCGAGATTCTCTCCTCTGTGTCTTGTATTCTGTTGGTGATACTT
ACATCTGTAATACTTCACTTCTTATTCAGATTTTTTCATGTCCAGGATTT
TTCCATTTGCATTTTCTTTGGTGTTTCTACTTCTACTTTTAGGTCTTGGA
CTGCTTTATTCAATTCTTTCACATGTTTGATTGTGTTATCCTCTCTTTCT
GTGAATCATTTATACCCTCCTCCCCCCCACTCTATTATTTCATGAGATAT
AATCTTAGGTCACCCCCCTGATTTTCAAAATGTGTTTGTGTACTCAGGAC
TTGCTGTGGTGAAAGAACTGGGTTCTGATGGTGCCCACATGTATTGGCTT
CTGTTGCTTATGATCTTGTGCTAGCCTCTTGTCATCTGGTTGCCCTTGGT
GTTTGCTGGTCTGTGTGACTCTGTCTGGAGTCTGCCTCTTTCATTCCTGG
GTTGCTTAAGGTCTCCTGGTAATCTTGTGTTTCTTGATATGGTAGACCAC
CTGCGGGGCCCATCTAACTGCGGGTATCTTCCTATGGCATATAATATGCT
TATCTGTTGCCCTGCTTGCAGCATATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_o08.b1 MSMg01no175_o08.b1 CHROMAT_FILE:
MSMg01no175_o08.b1 PHD_FILE: MSMg01no175_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:04 2005
         (285 letters)



>mm_chr1_114919614_114920298
          Length = 685

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaacatcttcgccaggagagacatctcaccagctcaatattttcccttttagttgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ataaacatcttcgccaggagagacatctcaccagctcaatattttcccttttagttgact 426

                                                                       
Query: 61  taaacattagttgacctgacattcaaatcatattttagttggtgctaggcctacactggc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 425 taaacattagttgacctgacattcaaatcatatcttagttggtgctaggcctacattggc 366

                                                                       
Query: 121 acctgtaggttaagaaatatccatcaacatcatgttatagttgtctgagattgacaccta 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 365 acctgtaggttaagaaatatccatcaacatcttgttatagttgtctgagattgacaccta 306

                                                                       
Query: 181 tgacattgttatcttattccattgtgtattcttgtggaagattaaatgacctcagtatag 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgacattgttatcttagtccattgtgtattcttgtggaagattaaatgacctcagtatag 246

                                                        
Query: 241 tctgtcatgtcttggcctcagatattttctctgtcctttagaaat 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tctgtcatgtcttggcctcagatattttctctgtcctttagaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)