Query= MSMg01no176_c13.b1 MSMg01no176_c13.b1 CHROMAT_FILE:
MSMg01no176_c13.b1 PHD_FILE: MSMg01no176_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:34 2005
(584 letters)
>mm_chr1_118419853_118420835
Length = 983
Score = 1013 bits (524), Expect = 0.0
Identities = 569/584 (97%), Gaps = 1/584 (0%)
Strand = Plus / Minus
Query: 1 cctccttgtaaaaaatggatctttcaaggacttccatttccttagaaaccctacagggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 cctccttgtaaaaaatggatctttcaaggacttccatttccttagaaaccctacagggct 724
Query: 61 attgtcttgtttttatttccccattgggaattttttacaggagtcttctctgaaaataag 120
||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||||
Sbjct: 723 attgtcttgtttttatttccccactcggaatttttcacaggagtcttccctgaaaataag 664
Query: 121 taagcagagatgtccttgggtacctgctctgggacaattaaatgggaccaagctacacgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 taagcagagatgtccttgggtacctgctctgggacaattaaatgggaccaagctacacgg 604
Query: 181 cccattcacattgctttctccccacttgctcttacagccactgtcatttcttttcctccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cccattcacattgctttctccccacttgctcttacagccactgtcatttcttttcctccc 544
Query: 241 tatccctgaccacctctcaggtgtggggtgtaggatttcctactcttgaaacataattta 300
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 543 tatccctgaccacctctcaggtgtgggctgtaggatttcctaatcatgaaacataattta 484
Query: 301 aaagatattggaggagagactgcacacattactgccgttgacagggatggctggtcacct 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 483 aaagatattggaggagagactgcacacattactgccgttgacagtgatggctggtcacct 424
Query: 361 cacactggaaggctgaacagaagtcactgctgagttttccaggccttgttttctggggtg 420
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct: 423 cacactggaaggctgaacagaagtcactgctgggttttccaggccttgttttctaggatg 364
Query: 421 ttcctttggtagtctcctctggcttcatacactgctgattctgatttgctaccctcctct 480
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 363 ctccttgggtagtctcctctggcttcatatactgctgattctgatttgctaccctcctct 304
Query: 481 ttctccttcctggggctgcttctccaatctatctccattttactcagtctagtcagatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttctccttcctggggctgcttctccaatctatctccattttactcagtctagtcagatcc 244
Query: 541 agtagatcctttccatctctatcattgtactattatttaaatgt 584
||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 243 agtagatcctttccatctctatcattgta-tattatttaaatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space: 558502
Effective search space used: 558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_c13.g1 MSMg01no176_c13.g1 CHROMAT_FILE:
MSMg01no176_c13.g1 PHD_FILE: MSMg01no176_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:34 2005
(226 letters)
>mm_chr1_118307295_118307919
Length = 625
Score = 385 bits (199), Expect = e-111
Identities = 219/229 (95%), Gaps = 7/229 (3%)
Strand = Plus / Plus
Query: 1 tgaggtcactttgcttctcgcattgttcctttta---aaaaaaattaatggagactaggt 57
||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 201 tgaggtcactttgcttctcgcattgttg----tggggaaaaaaattaatggagactaggt 256
Query: 58 caggatttcttttatatatgctcatattctatttaactttattttccactctatactatc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caggatttcttttatatatgctcatattctatttaactttattttccactctatactatc 316
Query: 118 taccaaaaggagtacaggtttggctaattttggcccttactgtgttattttgtttggata 177
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 317 taccaaaaggagtacaggtttggctaattttggcccttactgtgttactttgtttggata 376
Query: 178 atttccaatggttatcattcaatcaacatatatggagttgtgtggtgtg 226
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atttccaatggttatcattcaatcaacatatatggagttgtgtggtgtg 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 625
Length adjustment: 9
Effective length of query: 217
Effective length of database: 616
Effective search space: 133672
Effective search space used: 133672
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
