MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-176N03
Chromosome	1 (Build37)
Map Location	141,526,940 - 141,527,697
singlet/doublet	singlet
Overlap gene	EG624286
Upstream gene	LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b, Cfhr1
Downstream gene	EG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC545363 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC667745 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667745
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Lhx9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16876 MGI:1316721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	2310009B15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69549 MGI:1916799
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700019P21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75546 MGI:1922796
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	LOC100042623 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042623
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Dennd1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329260 MGI:2447812
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Crb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170788 MGI:2136343
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbtb41 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226470 MGI:2444487
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aspm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12316 MGI:1334448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	F13b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14060 MGI:88379
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cfhr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50702 MGI:2138169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG624286 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:624286 MGI:3647418
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	EG214403 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214403 MGI:3646434
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC026782 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545366 MGI:3611575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545399 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545399
definition	note : RuvB-like pseudogene pseudo : _no_value

name	EG545367 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545367 MGI:3643955
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	Cfh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12628 MGI:88385
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcnt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240776 MGI:3036273
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545363 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149234322 GeneID:545363
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC545363 transcript_id : XM_001480040.1

name	Lhx9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110611157 GeneID:16876 MGI:1316721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM homeobox protein 9 transcript_id : NM_010714.3

name	Lhx9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131184 GeneID:16876 MGI:1316721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM homeobox protein 9 transcript_id : NM_001025565.2

name	Lhx9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110611158 GeneID:16876 MGI:1316721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM homeobox protein 9 transcript_id : NM_001042577.1

name	2310009B15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487010 GeneID:69549 MGI:1916799
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310009B15 gene transcript_id : NM_001081226.1

name	1700019P21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149234283 GeneID:75546 MGI:1922796
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : RIKEN cDNA 1700019P21 gene transcript_id : XM_001478510.1

name	Dennd1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130741 GeneID:329260 MGI:2447812
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DENN/MADD domain containing 1B transcript_id : NM_183217.2

name	Dennd1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368722 GeneID:329260 MGI:2447812
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DENN/MADD domain containing 1B transcript_id : NM_181347.2

name	Crb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18875405 GeneID:170788 MGI:2136343
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : crumbs homolog 1 (Drosophila) transcript_id : NM_133239.1

name	Zbtb41 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371904 GeneID:226470 MGI:2444487
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 41 homolog transcript_id : NM_172643.2

name	Aspm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:90093357 GeneID:12316 MGI:1334448
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asp (abnormal spindle)-like, microcephaly associated (Drosophila) transcript_id : NM_009791.4

name	F13b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13624320 GeneID:14060 MGI:88379
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coagulation factor XIII, beta subunit transcript_id : NM_031164.1

name	Cfhr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7656968 GeneID:50702 MGI:2138169
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement factor H-related 1 transcript_id : NM_015780.1

name	EG214403 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145727 GeneID:214403 MGI:3646434
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG214403 transcript_id : NM_001029977.2

name	BC026782 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71361675 GeneID:545366 MGI:3611575
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC026782 transcript_id : NM_001025575.1

name	EG545367 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149234286 GeneID:545367 MGI:3643955
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : predicted gene, EG545367 transcript_id : XM_619677.4

name	Cfh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109627651 GeneID:12628 MGI:88385
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complement component factor h transcript_id : NM_009888.3

name	Kcnt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486635 GeneID:240776 MGI:3036273
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium channel, subfamily T, member 2 transcript_id : NM_001081027.1

name	LOC545363 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149234323 GeneID:545363
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480090.1

name	Lhx9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754542 CCDS:CCDS15333.1 GeneID:16876 MGI:1316721
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : LIM homeobox protein 9 isoform b protein_id : NP_034844.1

name	Lhx9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70909340 CCDS:CCDS15334.1 GeneID:16876 MGI:1316721
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : LIM homeobox protein 9 isoform a protein_id : NP_001020736.1

name	Lhx9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110611159 GeneID:16876 MGI:1316721
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform c is encoded by transcript variant 3 product : LIM homeobox protein 9 isoform c protein_id : NP_001036042.1

name	2310009B15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487011 GeneID:69549 MGI:1916799
definition	codon_start : 1 product : hypothetical protein LOC69549 protein_id : NP_001074695.1

name	1700019P21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149234284 GeneID:75546 MGI:1922796
definition	codon_start : 1 product : hypothetical protein LOC75546 protein_id : XP_001478560.1

name	Dennd1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34147294 CCDS:CCDS15335.1 GeneID:329260 MGI:2447812
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : DENN/MADD domain containing 1B isoform 2 protein_id : NP_899040.1

name	Dennd1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626175 GeneID:329260 MGI:2447812
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : DENN/MADD domain containing 1B isoform 1 protein_id : NP_851992.1

name	Crb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875406 CCDS:CCDS15336.1 GeneID:170788 MGI:2136343
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0042462 - eye photoreceptor cell development [Evidence IMP]; GO:0016044 - membrane organization and biogenesis [Evidence IMP]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 exception : mismatches in translation product : crumbs homolog 1 protein_id : NP_573502.1

name	Zbtb41 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369918 GeneID:226470 MGI:2444487
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger and BTB domain containing 41 homolog protein_id : NP_766231.1

name	Aspm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87298845 GeneID:12316 MGI:1334448
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 product : calmodulin binding protein 1 protein_id : NP_033921.3

name	F13b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13624321 GeneID:14060 MGI:88379
definition	GO_process : GO:0007596 - blood coagulation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : coagulation factor XIII, beta subunit protein_id : NP_112441.1

name	Cfhr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7656969 CCDS:CCDS15337.1 GeneID:50702 MGI:2138169
definition	codon_start : 1 note : complement component factor h-like 1 product : complement factor H-related protein protein_id : NP_056595.1

name	EG214403 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114145728 GeneID:214403 MGI:3646434
definition	codon_start : 1 exception : mismatches in translation product : complement factor H-related protein C protein_id : NP_001025148.2

name	BC026782 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71361676 CCDS:CCDS15339.1 GeneID:545366 MGI:3611575
definition	codon_start : 1 product : complement factor H-related protein B protein_id : NP_001020746.1

name	EG545367 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149234287 GeneID:545367 MGI:3643955
definition	codon_start : 1 product : similar to complement factor H-related protein C protein_id : XP_619677.4

name	Cfh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109627652 GeneID:12628 MGI:88385
definition	GO_process : GO:0006956 - complement activation [Evidence IEA]; GO:0006957 - complement activation, alternative pathway [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 note : complement factor H related protein 3A4/5G4 product : complement component factor H protein_id : NP_034018.2

name	Kcnt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486636 GeneID:240776 MGI:3036273
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0015269 - calcium-activated potassium channel activity [Evidence IEA]; GO:0005267 - potassium channel activity [Evidence ISS] GO_process : GO:0006813 - potassium ion transport [Evidence ISS] [Evidence IEA] codon_start : 1 note : sodium- and chloride-activated ATP-sensitive potassium channel subunit product : potassium channel, subfamily T, member 2 protein_id : NP_001074496.1

name	LOC667745 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667745
definition	number : 2 pseudo : _no_value

name	LOC667745 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667745
definition	number : 1 pseudo : _no_value

name	LOC100042623 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042623
definition	number : 2 pseudo : _no_value

name	LOC100042623 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042623
definition	number : 1 pseudo : _no_value

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 9

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 8

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 7

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 6

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 5

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 4

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 3

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 2

name	EG624286 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:624286
definition	number : 1

name	(CDS detail)
type	STS
link
xref	UniSTS:145335
definition	standard_name : AU048885

name	(CDS detail)
type	STS
link
xref	UniSTS:185454
definition	standard_name : BB104635

name	(CDS detail)
type	STS
link
xref	UniSTS:207226
definition	standard_name : BE685937

name	(CDS detail)
type	STS
link
xref	UniSTS:215972
definition	standard_name : RH132689

name	(CDS detail)
type	STS
link
xref	UniSTS:207225
definition	standard_name : BE632883

name	(CDS detail)
type	STS
link
xref	UniSTS:128755
definition	standard_name : D1Mit394

name	(CDS detail)
type	STS
link
xref	UniSTS:128788
definition	standard_name : D1Mit422

name	(CDS detail)
type	STS
link
xref	UniSTS:210133
definition	standard_name : RH136138

name	(CDS detail)
type	STS
link
xref	UniSTS:210161
definition	standard_name : RH136166

name	(CDS detail)
type	STS
link
xref	UniSTS:143055
definition	standard_name : F13b

name	(CDS detail)
type	STS
link
xref	UniSTS:498464
definition	standard_name : Cfh

name	(CDS detail)
type	STS
link
xref	UniSTS:128537
definition	standard_name : D1Mit199

name	(CDS detail)
type	STS
link
xref	UniSTS:234229
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:141324
definition	standard_name : Cfh

name	(CDS detail)
type	STS
link
xref	UniSTS:128478
definition	standard_name : D1Mit141

name	(CDS detail)
type	STS
link
xref	UniSTS:209791
definition	standard_name : RH127138

name	(CDS detail)
type	STS
link
xref	UniSTS:224249
definition

clone name	MSMg01-185F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412B01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-289G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453G07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-545L10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-176N03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-312N19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-517B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388D02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-305J02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-533H12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-124I09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-381G05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-533H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140D04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-409L19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-167N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523A09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-468E10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-296H07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-078B15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-433G12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-395G12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-106A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-352I16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355C12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-381L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021M18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054H01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201L11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275E09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224H15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313D16
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-176N03.T7 (MSMg01no176_n03.b1)	MSMg01-176N03.TJ (MSMg01no176_n03.g1)
ACC	AG371403	AG371404
length	1,234	1,230
length of high quality (start - end)	752 (130 - 881)	389 (71 - 459)
definition	CHROMAT_FILE: MSMg01no176_n03.b1 PHD_FILE: MSMg01no176_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:03 2005	CHROMAT_FILE: MSMg01no176_n03.g1 PHD_FILE: MSMg01no176_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:03 2005
singlet/doublet	singlet	---
BLAST hit	plural	no hit data
sequence	NCTTTTCTNNNNNNNTACACTGGGCGCTAAGACTCCTAAGGGAGAGGATC CGCGGAATTCAACTCAAGCTGGAATTACTATTAACTATTTAAAAACTCTT TCTTAGCATATATCTGTTTTCTAACTGAGAAATATATTTGGTTCCCCAAA TGTGCTTCTGTAAATGCTACATAGGATTGCTTCATTTGAACACTAGGAGA GAGGGGAAAAAGTGAATAGAGGAAGGGAAGAAAAGAGGAAGGAGGAGAAA AAGACTCTCCATTGAAATTTCCATTTGAACATTCCACAAACACAATTACA ATTCAAATATTAAAAGTTTAGTGTTTTGTTCTTGGGAATCGTTTTCCTCA GGAAGAAAGGTGACAGAAGGCATTCTCAAGGGATATTGAATAAAAGTTTG ATGATTAAAATAATGAGATCTGCATCTTAAATCATGTAAGTTTGCAAATC TCTAGCAACAGACTTCATTTTACTGAACAAATATATGTACTCCTTGATGA ACAGTAGTTTCTTATTAAAAAAAAAAGTACTGCATCACTCTACTTTGTTT TCCTGAAGAAGAAAGAGTTTATCTGAGTTGATGTACAATTATCTTTAAAC CAAGGCACCTTAATCTCTTTGACACTATATCGCTGAATATACAATTTGTT GCAGCTGACTTTACACGTATCTTGGACTCCATAAGAAACCAAAATTAAAA TAAGAAAATATGAAAATAAGTAGACTTTCTTGTAGCTGATCATAGCCAGA CCAAAGGGGTCTAAAACAACTTCTCGGAACTTTTGGATTTCTAACATTTA ATAGCCCCTCTCTAATGATAGGCAGGAACAGCAGAAAAAATAACACAATG TCCTGAACAACTTATTTTGATGCATCAGTATCCTGTAGAGATTACATTTT GCAAAATTGATTTACAATGTAAAGAAACTAAGCATGATGTATTCCCATTC AAATATTTCTACAAAACATTTTGAATTAAAAAACTGCCCATTTGAGAATC TATATTACAGGGAAAAAGTAGTTTTGTTCTTAATCAGTTTTAAAAGGTCT TACCAAAAGGTTGGCTTTCCCTTTTAAAACATAAGGCCCCCCCTTTTCCA CCAAGGAAACCCCCCCACAAAAAACACTTTCCGGCCCAGGTTTATTCACC CTAACGAAAAAAAAAATGGATTAAACTTTTATACCGGGTTAAACCGCACC TTTATTATCCCCCCTCCCAAAACCCCAACCGGAA	NNNTTTTCGAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXTTCACTTTCCAGAAAAACAATTACTAAAGT ATAAATTAGAAGAAAACTAAATTTGAAAAATGGTTAAGTATAAATTAACT TAGGATCATATTTTAAAATACTAAGTGACATTAAAAGGAATGCATATCAA CACTATGATGTTGTAACATTTTAAAGGTATTTATTTTTAAAAAAATAAAT TGAGACAAAACTCAGACATTTATAAGGATACACAACAAGAAAAAAATGAC ATGACATAAACATATTGGTACAAAGATTGGAGAAAAAACATCAAAACTGT GTCATGCACACTACTCAAGAATCCTCTTCCCCATAACACATCATAGAGAA TTCATAGTTAATTAGCAGTTAAAATGTTATTATATCAATGATGTTTTAGC TCTTTTTTTTTTCGCCCCCCATAATTTTATAATCATCTTGAAACAAAAGC ACAGTAAGCTAAAAGCACATAGTATTATAAAATTAAGTTTTCTAAATGTT TTGTTGTATTATGGCGTAAGATCGACTAGGAGTGTTTAGGTTGTATATAC TTATCAGGAATCTTCAATATTCACTTATACACACTGGAAATAATGAAGCA TTTTTCCACAGTTAATACAGAAGGGACAGAGAGTCATGAGAATCTTGTGA TGTAAGAGCTGGCAAATACAGAGGTGGATGCTCTCAGCCAACAATTGGAC TGAGCAAAAGTCCCCAATGGATCAGCTAGAGAAACAACTGATGGAGGTGA AGGAGCTTGCAGCCCCATAGGACGAATAACAATATGAACTCACCAGTAAC CCCAGAGCTCCCAGGGACTAAACCACCAACTAAAGAATAAATATGGAGGG GCCCATGGCTCCCGTGGCATATGTAGCAGAGGATAGTCTTGTTAGACATC CATGGGAAAAGAGCCTTTAGGCCCTGAAATGCCTGAAAATGCCTGATGCC CCCCTGGTAGGGAAGTGCCAGGAACGGAAAAAAAATTTGTTTAATTTTTT ACCCCCCCTTAACTATTCGTAAATTTCTCTTTACCCTCTCTCCTCCTACT CCTTATATCTTTCCCTTTCCTTCCTTTTCTCTCCTTTTTTCTCTTCTCCT TCTTTTTTTTCTTGTTCTCCTTTTTCTCCCTTTCACTCCTTCCTTCCCGT CTCTCTCTTCTTTTCTCCCTCTCTTTCTTA
quality values	Open. Hide. 0 3 10 10 9 9 11 3 0 0 0 0 0 0 0 3 9 9 7 6 6 8 8 8 10 10 8 8 10 8 8 12 13 8 8 8 8 8 8 15 21 28 18 26 23 23 23 42 42 42 36 33 31 29 29 44 42 42 43 43 31 31 31 36 34 33 33 33 33 36 33 33 32 27 21 14 15 10 10 9 9 9 12 11 9 12 15 10 13 10 11 18 27 41 48 47 47 47 42 42 50 43 43 43 43 43 40 47 47 47 47 42 47 47 54 35 28 13 12 14 11 11 10 14 29 26 32 19 15 17 24 24 42 42 50 50 57 57 57 57 68 68 68 68 57 57 59 57 57 57 57 68 57 57 57 57 57 57 57 68 68 68 68 68 68 50 50 50 50 50 50 50 57 57 68 68 68 68 68 68 57 57 54 54 54 57 57 68 59 59 57 57 43 43 35 43 44 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 43 43 43 43 43 43 43 52 62 62 68 68 68 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 68 62 62 62 62 62 62 62 62 62 68 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 44 39 27 8 8 8 8 8 12 43 44 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 62 68 68 68 68 68 68 62 62 62 62 62 68 62 62 62 62 68 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 57 57 57 68 68 68 68 59 59 59 68 68 68 68 68 59 59 59 57 57 57 57 57 68 68 68 68 68 68 57 59 52 52 52 59 59 68 68 68 68 59 59 59 59 59 59 52 52 52 57 57 57 57 57 57 59 57 57 57 57 57 57 57 59 59 59 59 59 59 59 57 59 59 59 59 59 54 54 54 57 57 68 68 68 68 57 59 43 43 43 59 59 68 68 68 59 59 48 48 48 57 57 57 57 57 57 59 59 59 43 43 43 43 43 59 59 48 42 42 43 43 43 43 47 59 48 48 43 59 59 59 57 43 43 43 37 36 39 59 59 59 59 48 46 59 59 47 39 39 39 37 39 44 59 59 47 47 50 50 50 50 53 48 50 48 57 48 48 39 39 39 40 57 57 48 43 43 32 32 25 25 12 18 25 34 34 40 34 34 34 34 31 31 35 37 35 31 31 35 36 39 39 37 39 36 31 31 34 37 39 34 36 41 31 31 32 37 37 34 32 23 20 19 25 25 37 37 37 59 43 31 31 32 37 37 37 39 39 37 37 41 44 44 37 37 37 37 41 34 34 22 28 32 37 37 32 30 23 19 17 17 21 22 25 23 22 18 29 41 39 39 19 16 15 17 18 17 19 8 6 9 9 9 19 16 37 39 37 37 39 39 32 24 24 31 28 28 27 32 39 41 37 37 39 37 34 39 39 43 47 44 44 37 37 44 39 39 39 36 36 33 34 22 25 18 18 10 10 11 17 13 15 10 10 9 10 13 20 17 24 20 31 31 28 20 20 23 23 23 22 25 25 22 20 25 22 22 22 19 19 14 14 10 15 11 11 17 19 30 27 25 26 24 27 23 16 11 11 11 13 13 25 12 12 11 11 11 13 11 17 14 14 13 8 10 8 13 11 8 9 9 15 18 18 30 22 21 14 14 14 9 10 10 10 9 9 9 9 10 12 10 9 9 10 13 16 24 26 11 12 12 9 9 9 12 11 9 15 9 9 9 8 9 8 8 8 8 8 10 10 10 9 8 9 13 10 10 10 14 14 32 25 10 8 8 8 10 11 12 19 15 10 10 10 13 11 9 11 9 9 12 11 11 14 19 16 12 10 10 8 6 6 6 6 8 8 10 11 12 11 11 18 22 16 14 9 9 8 8 11 11 11 11 11 11 16 16 18 10 10 8 8 8 8 8 10 10 10 10 10 10 10 14 12 16 13 11 10 14 12 10 10 10 10 10 10 11 19 12 12 9 9 8 8 6 6 8 10 10 12 12 6 6 6 6 11 10 20 15 8 6 6 6 6 6 10 12 13 9 9 9 9 14 12 10 10 8 8 6 6 6 6 8 8 10 12 6 6 8 8 11 11 15 10 11 9 10 14 14 12 12 9 6 6 6 12 12 10 8 8 6 6 13 8 9 13 8 8 8 6 6 6 7 8 15 8 8 8 8 10 10 10 9 9 9 9 8 10 8 8 8 8 8 8 8 17 15 10 10 8 8 8 8 7 6 8 8 16 16 12 11 10 10 15 8 8 8 8 8 8	Open. Hide. 0 0 0 3 6 6 6 6 6 6 6 7 6 6 6 6 8 6 6 6 6 8 10 15 9 8 9 8 11 9 18 19 19 8 9 10 21 21 28 28 28 35 35 36 36 36 37 37 37 40 40 40 40 47 57 57 57 57 57 54 54 54 57 57 57 57 48 48 57 57 50 50 50 50 50 50 53 50 51 50 50 50 51 57 68 68 68 68 57 57 57 46 47 37 37 35 42 42 47 47 47 47 57 57 57 57 57 57 47 47 57 57 59 59 57 50 50 50 50 50 50 57 57 57 57 52 52 52 59 57 57 68 68 68 68 51 50 50 68 68 68 68 68 68 68 57 50 50 50 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 57 57 57 39 39 39 42 59 59 68 68 59 59 59 57 57 57 57 57 54 54 57 57 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 57 57 57 59 59 59 59 68 68 68 68 68 68 68 59 57 57 57 68 68 68 68 68 68 68 59 59 59 57 57 57 68 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 35 35 24 19 16 15 15 21 27 44 59 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 59 59 68 68 59 59 59 59 59 59 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 33 30 18 20 18 23 9 6 6 6 6 8 15 12 14 10 10 10 15 22 36 59 59 59 59 59 47 47 28 28 20 20 20 28 31 30 34 13 11 10 10 10 18 10 10 10 12 19 21 25 15 41 41 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 48 48 43 43 43 57 59 68 68 68 68 59 59 48 48 59 59 59 68 68 68 68 68 57 57 57 57 57 57 68 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 57 57 57 59 59 59 59 54 54 54 59 59 68 59 59 57 57 57 48 44 57 57 57 57 57 68 68 68 68 68 59 59 59 57 57 57 57 57 57 59 59 59 48 48 43 47 43 59 59 68 68 59 59 57 57 54 54 54 68 68 57 59 57 57 57 57 57 57 47 47 43 43 43 44 43 50 37 34 34 48 39 39 35 35 35 43 59 59 43 37 31 37 35 35 35 43 36 41 44 39 44 47 41 41 40 41 41 41 41 41 41 37 37 39 32 32 35 35 33 28 28 25 16 24 11 11 12 25 25 39 37 39 34 36 38 39 39 39 30 30 35 39 39 41 39 32 27 25 26 29 27 28 25 28 25 31 39 34 32 28 28 34 36 37 37 37 37 25 21 21 25 21 19 35 37 39 34 32 18 18 18 17 17 24 30 28 28 25 25 10 10 10 13 15 18 21 15 15 11 15 21 18 20 23 32 27 26 32 37 32 31 36 37 31 31 32 37 37 31 35 37 32 32 29 24 24 17 17 17 24 26 31 39 28 31 31 29 32 33 24 18 15 10 10 10 15 15 21 19 10 10 10 10 13 13 19 9 9 9 15 10 12 19 20 20 32 32 29 30 30 30 18 23 28 31 22 25 30 30 27 22 16 17 16 15 15 15 18 18 18 13 12 12 17 17 14 14 13 9 10 8 8 10 10 11 8 11 15 13 13 13 10 10 10 10 10 10 10 10 10 10 11 10 9 14 17 15 11 13 12 11 11 9 9 9 8 8 10 10 10 11 10 12 9 9 8 8 8 8 8 11 11 14 11 10 10 10 8 8 8 12 12 12 13 8 8 8 8 10 12 15 14 13 17 8 8 8 10 10 8 8 8 10 10 18 22 25 13 12 9 7 7 8 8 8 12 13 15 13 9 8 8 10 15 10 10 8 6 6 6 6 8 8 11 9 14 13 14 13 9 9 10 10 8 8 8 8 6 6 8 8 8 9 14 14 11 11 12 12 12 12 9 11 9 11 11 10 10 8 8 8 8 10 8 9 8 8 8 8 8 8 10 10 10 11 8 8 8 10 12 10 10 8 8 8 8 9 9 9 8 8 8 8 6 6 8 8 8 11 8 8 8 9 9 10 10 12 15 10 8 8 10 10 12 12 9 9 10 10 10 8 8 8 9 11 10 10 10 10 10 9 9 9 11 8 10 10 11 11 10 10 13 10 10 10 10 12 12 11 11 15 21 15 15 18 11 9 9 9 9 8 10 10 12 8 6 6 8 8 8 10 8 6 6 8 16 17 14 14 10 10 8 8 8 8 8 8 12 12 10 12 10 10 9 9 9 13 10 10 8 8 8 11 12 13 10 10 10 8 6 6 6 6 8 8 8 8 8 9 9 9 8 8 8 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no176_n03.b1 MSMg01no176_n03.b1 CHROMAT_FILE:
MSMg01no176_n03.b1 PHD_FILE: MSMg01no176_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:03 2005
         (752 letters)



>mm_chr1_141526655_141527810
          Length = 1156

 Score =  903 bits (467), Expect = 0.0
 Identities = 683/769 (88%), Gaps = 40/769 (5%)
 Strand = Plus / Minus

                                                                        
Query: 8    tttggttccccaaatgtgcttctgtaaatgctacataggattgcttcatttgaacactag 67
            |||| ||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||
Sbjct: 1043 tttgtttccccaaatgtgcttctgtacatgctacctaggcttgcttcctttgaacactag 984

                                                                        
Query: 68   ga----------ga----gaggggaa--a-aagtgaatagaggaagggaagaaaag-agg 109
            ||          ||    ||||||||  | ||   |||||||| ||||||| |||| |||
Sbjct: 983  gatggaagggaggagtttgaggggaaggagaa---aatagagggagggaag-aaagaagg 928

                                                                        
Query: 110  aaggaggagaaaaagactctccattgaaatttccattt-gaacattccacaaacacaatt 168
             |||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||
Sbjct: 927  caggaggagaaaaagactctccattaaaatttcc-tttggaacattccacaaacacaatt 869

                                                                        
Query: 169  acaattcaaatattaaaagtttagtgttttgttcttgggaatcgttttcctcaggaagaa 228
            |||| |||||||||||||||||||| | | |||||||| |||| |||||| |||||||| 
Sbjct: 868  acaagtcaaatattaaaagtttagtatgtggttcttggaaatcattttccacaggaagag 809

                                                                        
Query: 229  aggtgacagaaggcattctca-agggatattgaataaaagtttgatgattaaaataatga 287
            |||| ||||  |||||||||| | ||||||| |||| |||||||||||| ||||||| ||
Sbjct: 808  aggtaacagggggcattctcaca-ggatattaaatagaagtttgatgatgaaaataagga 750

                                                                        
Query: 288  gatctgcatcttaa-atcatgtaagtttgcaaatctctagcaaca--gacttcattttac 344
            ||| |||||||||| | ||| ||||   |||||| ||||  || |  |||||||||||||
Sbjct: 749  gatttgcatcttaaca-catataagcaagcaaatttcta--aaaatggacttcattttac 693

                                                                        
Query: 345  tgaacaaatatatgtactccttgatgaacagtagtttcttatt-----aaaaaaaaaagt 399
            |||| |||||| | |||||||||||||| ||||||||||||||     ||||||||||||
Sbjct: 692  tgaagaaatatttttactccttgatgaaaagtagtttcttattaaaaaaaaaaaaaaagt 633

                                                                        
Query: 400  actgcatcactctactttgttttcctgaagaagaaagagtttatctgagttgatgtacaa 459
            ||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||
Sbjct: 632  actgcatcactctactttgttttcctggagcagaaagagtttacctgagttgatgtacaa 573

                                                                        
Query: 460  ttatctttaaaccaaggcaccttaatctctttgacactatatcgctgaatatacaatttg 519
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572  ttatctttacaccaaggcaccttaatctctttgacactatatcgctgaatatacaatttg 513

                                                                        
Query: 520  ttgcagctgactttacacgtatcttggactccataagaaaccaaaattaaaataagaaaa 579
            ||||||||||||||| | | |||||||||||||||||| |||||||||||||||||||||
Sbjct: 512  ttgcagctgactttaaaaggatcttggactccataagacaccaaaattaaaataagaaaa 453

                                                                        
Query: 580  tatgaaaataagtagactttcttgtagctgatcatagccagaccaaag-gggtctaaaac 638
            |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 452  tatgaaaataagtagactttcttgtagctgatcatagccagaccaaagcggg-ctaaaac 394

                                                                        
Query: 639  aacttctcggaacttttggatttctaacatttaatagcccctctctaatgataggcagga 698
            |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 393  aacttctcagaacttttggatttctaacatataatagcccctctctaatgataggcagga 334

                                                             
Query: 699  acagcagaaaaaataacacaatgtcctgaacaacttattttgatgcatc 747
            |||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333  acaata-aaaaaataacacaatgtcctgaacaacttattttgatgcatc 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 752
Length of database: 1156
Length adjustment: 10
Effective length of query: 742
Effective length of database: 1146
Effective search space:   850332
Effective search space used:   850332
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information