TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAAGTGTCCCCAGCTGTCCGTATTTCTTTTATATTTTAAAACTCT
GAAATAGAGGGCCAACAAGATGGCTCAGTGGGAAAAATTGATTTTGCTGC
ATCTGACAACCTGAATTTCACCCACAGAATCCACATGTTAAAAGAAAAGT
TCAGACATCTACAAGTTGCTCCTTGTCTTCCAAACACATTCTACAGCATG
TAGCCCCATTACAGCAAACAAACAAATACATAAGAAAAGAAATTAAACTA
TTTCCAACAAAGTGAAAGGTGAGAGAAAACAGAGATTGGATGATGAATTA
GATGAATCCAGCTGCTCAAAGCATAAGGTTAATTCATTTTTAGGAAACTG
AATTTTATTGAAATTCTGGGTTGATATTTGACTTACACTTTTTTCTTTTC
ATAATGTGACTTGTAATTCTATTTTAAAATTACCTTTATCCAAATAGGCA
AGATTTGTTTTTAATTTAATTTTCAAGGTTATTAATATCTTGCCCATCAC
TGGTTATTTCCTTTCCCCACAAACACATAGGTATCACAGATATAAACTTG
GCTATTTCAGGGTAGAGAGTATTATGGAGTATTTTCATATCCTTGGTATG
GAAAATAAGATGAATTTATTATTATAATGAACTATATTTTATTTGCTTGA
CCGTACTCCCCTCCAATTATACCCCCC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCGACATCCTTAATCATCAGGGAAATGCA
AATCAAAATAACCCTAAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGAACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGCTATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAA

Query= MSMg01no177_a05.b1 MSMg01no177_a05.b1 CHROMAT_FILE:
MSMg01no177_a05.b1 PHD_FILE: MSMg01no177_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:29 2005
         (589 letters)



>mm_chr1_116590749_116591737
          Length = 989

 Score = 1042 bits (539), Expect = 0.0
 Identities = 572/585 (97%), Gaps = 6/585 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcaaaagtgt--ccccagctgtccgtatttcttttatattttaaaactctgaaatagag 65
           |||||||||||  |   |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 208 ttcaaaagtgtatc---agctgtccgtatttcttttatattttaaaactctaaaatagag 264

                                                                       
Query: 66  ggccaacaagatggctcagtgggaaaaa-ttgattttgctgcatctgacaacctgaattt 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 ggccaacaagatggctcagtgggaaaaaattgattttgctgcatctgacaacctgaattt 324

                                                                       
Query: 125 cacccacagaatccacatgttaaaagaaaagttcagacatctacaagttgctccttgtct 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 325 cacccacagaatccacatgttaaaagaaaagatcagacatctacaagttgccccttgtct 384

                                                                       
Query: 185 tccaaacacattctacagcatgtagccccattacagcaaacaaacaaatacataagaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccaaacacattctacagcatgtagccccattacagcaaacaaacaaatacataagaaaa 444

                                                                       
Query: 245 gaaattaaactatttccaacaaagtgaaaggtgagagaaaacagagattggatgatgaat 304
           ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 gaaattaaattatttccaacaaagtgagaggtgagagaaaacagagattggatgatgaat 504

                                                                       
Query: 305 tagatgaatccagctgctcaaagcataaggttaattcatttttaggaaactgaattttat 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 tagatgaatccagctgctcaaagcataaggttaattcattttcaggaaactgaattttat 564

                                                                       
Query: 365 tgaaattctgggttgatatttgacttacacttttttcttttcataatgtgacttgtaatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 tgaaattctgggttgatatttgacttacacttttttcttttcataatgtgatttgtaatt 624

                                                                       
Query: 425 ctattttaaaattacctttatccaaataggcaagatttgtttttaatttaattttcaagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctattttaaaattacctttatccaaataggcaagatttgtttttaatttaattttcaagg 684

                                                                       
Query: 485 ttattaatatcttgcccatcactggttatttcctttccccacaaacacataggtatcaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttattaatatcttgcccatcactggttatttcctttccccacaaacacataggtatcaca 744

                                                        
Query: 545 gatataaacttggctatttcagggtagagagtattatggagtatt 589
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gatataaacttggctatttcagggtagagagtattatggagtatt 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)