TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATCCGCG
GAATTCTTATTTCCATTAAAATTCACTTTGGTCTCCATATGAAATAATTT
TAGACTGACACATTACCCACATCTGGAGAGGTACATAAATGTGTAATCCC
TAAGTAGAACATTTGCAAAATGTAGTAAAACTCGACTGAATCCACTTTGA
ATTGTTCAAAATTGTTGTGTGATTCGGATTTCAGGTTAATCATTAGTTCG
GTAAAGCTCAAACACTACAGCCTACTCAAGAGTGACTGCAAGGCAGCATT
TAAACAAGTGGCATGTGTGTACAAGCACGTGCAATTAGTGTGTGTGCACA
TGCAGTGATAAACTAGTTTCAAGTGAGTTACCGACAAGGTGTTGTTAGGA
CAGCAATCAGAGGAGCAGCACAGAGTGGCAGTGTCTTTAGTAGGAAGGGC
TATGGCTTCTTCCTAGAAATTGTCTACCACACCCACTATAAGAATTGTAA
CTTCTCCAATAAAACTTTATCAAAGGGTTATGCAAATTTGCTGATTCCTT
ATGAGGTTTCAGATCAAAATCTTATACCTGGAAAAGGCCTTGTAGTTATG
TGACTGTAAGTGTGAAATGTGAAGGAACTAACTGCTTCAGGACATCAGTG
TGGAATCATATGTTCTCCATAACTAACATAGTGAAATTCAGGGAAGTGTA
AGCATTTCCACAACACTGTCCAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAAGACTGCCACGTGGGTTC
TGCTGCAGAGCTGGGGATGGGACCAGACTGGGCTATTTTAAAGTTCTGAG
AACCTCCCTTCCACTGATGTCATTAATGGTGGCACTAGTTTACTGTCCCA
TCAGCAGCAACTAATGGTTTCTCTTTCCCCATATCCTTACCAGCATTTGT
TGTCACACTTATTGATGTTAGTAATTCTGACTGGGGTGAAGTGGACATCT
CAATGTATACTTAATTTGCATTTTCCTGATTCAATGGATGTTAAATATGT
TCTTATTGGACATTTGGGTTTTCTTTTTCTTTTGAGAATTGTCACTTTGG
TAGCTCATTGGATGATAGATACGTTTAGATTTTTGATGTTCTTTGAGAAC
TCTGAGCACTGGATTCCTGCCTGAGGTGTAGTTGACAAAGCTTTTTGCCT
ATTCTGTGGTCTTCTTGTGCTGCTGATAGTTTCTTTGGCTTTGGAACTGC
TATGGTTTTACATTTTTCCCATTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTACTTACTTCCTTCCTTCCTTGCTTCCTTCCTTCCTTCCTT
CCTTCTTTCTATCTCTTTCTCTCTCTCGCTCTCTCTCTCTCTCTCTCATT
CCTTTCTTTCTTTC

Query= MSMg01no177_g07.b1 MSMg01no177_g07.b1 CHROMAT_FILE:
MSMg01no177_g07.b1 PHD_FILE: MSMg01no177_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:57 2005
         (680 letters)



>mm_chr1_140410305_140411387
          Length = 1083

 Score = 1199 bits (620), Expect = 0.0
 Identities = 660/674 (97%), Gaps = 3/674 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcttatttccattaaaattcactttggtctccatatgaaataattttagactgaca 67
           |||||||||  || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 208 gaattcttaagtctattaaaattcactttggtctccatatgaaataattttagactgata 267

                                                                       
Query: 68  cattacccacatctggagaggtacataaatgtgtaatccctaagtagaacatttgcaaaa 127
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cattacccagatctggagaggtacataaatgtgtaatccctaagtagaacatttgcaaaa 327

                                                                       
Query: 128 tgtagtaaaactc-gactgaatccactttgaattgttcaaaattgttgtgtgattcggat 186
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgtagtaaaactcagactgaatccactttgaattgttcaaaattgttgtgtgattcggat 387

                                                                       
Query: 187 ttcaggttaatcattagttcggtaaagctcaaacactacagcctactcaagagtgactgc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttcaggttaatcattagttcggtaaagctcaaacactacagcctactcaagagtgactgc 447

                                                                       
Query: 247 aaggcagcatttaaacaagtggcatgtgtgtacaagcacgtgcaattagtgtgtgtgcac 306
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aacgcagcatttaaacaagtggcatgtgtgtacaagcacgtgcaattagtgtgtgtgcac 507

                                                                       
Query: 307 atgcagtgataaacta--gtttcaagtgagttaccgacaaggtgttgttaggacagcaat 364
           ||||| ||||||||||  |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 508 atgcaatgataaactagtgtttcaagtgagttactgacaaggtgttgttaggacagcaat 567

                                                                       
Query: 365 cagaggagcagcacagagtggcagtgtctttagtaggaagggctatggcttcttcctaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cagaggagcagcacagagtggcagtgtctttagtaggaagggctatggcttcttcctaga 627

                                                                       
Query: 425 aattgtctaccacacccactataagaattgtaacttctccaataaaactttatcaaaggg 484
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aattgtctaccacacctactataagaattgtaacttctccaataaaactttatcaaaggg 687

                                                                       
Query: 485 ttatgcaaatttgctgattccttatgaggtttcagatcaaaatcttatacctggaaaagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ttatgcaaatttgctgattccttatgaggtttcagatcaaaatcttatacctggaaaagg 747

                                                                       
Query: 545 ccttgtagttatgtgactgtaagtgtgaaatgtgaaggaactaactgcttcaggacatca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ccttgtagttatgtgactgtaagtgtgaaatgtgaaggaactaactgcttcaggacatca 807

                                                                       
Query: 605 gtgtggaatcatatgttctccataactaacatagtgaaattcagggaagtgtaagcattt 664
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 808 gtgtggaatcatatgttctccataactaacaaagtgaaattcagggaagtgtaagcattt 867

                         
Query: 665 ccacaacactgtcc 678
           |||| |||||||||
Sbjct: 868 ccacgacactgtcc 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1083
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1073
Effective search space:   718910
Effective search space used:   718910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)