TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTATCAGAGCATGGGTGTCAAGTTGGGCCAATAATTGATTGGCCA
CTCCCTCAATTTCTTCTCCCTCTTTATCCCTGCCCATTTTTCTTCAGGTC
AAATTGTGAGTCAAAGGTTTTGTGGCTGAGTTTCTGTCCCCATCCTTCCA
CTGAAATTCTTGCCTGGTTAGAGGAGGTGGGCATTTAAGGTTCCACAAAA
GCCTACTACTAGGAGTCTTATTAGTTATGACCAAATTCATAATTTCCTGG
GAGTTTCCATTGTCCTAATTTTCTATCCTCTCCCACATCAATTCTAGATC
TCTCTCCTTCTCTCCTCCACACACTTGATGACTCTTGTTCCTCTTCCCAC
CCCTTTTACCATGACCTTCCTCTCTTTATCCACCACTGATTTCTCTTTAT
TTTCTTTTCTCAGTGAGTAACAAGCATCTTCCCTTGGGCCATCCTTGACA
CTTAGTTTTTCTGGTCTGTGAATGGTAGCATGCTTATTCTGTGCTTTATG
GCTATTATTTCACTTATAAGTGAACACAAACCATATGTGTCTTTCAGGGT
CTGGGTTACCTCACTGAGGGTGATCTTTTCAAGTTCCAACCATTTGCCTG
CACATTTCATGATTCTCAACTATTTTCTAATAGTTGAGAAATATCCCATT
GTATAGATGC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCTTTATGTGCGAAAAGTGATA
GAGAATACTGAAAATTTAAATTTTTGATCTGAATAAGTTGTAGGGGACAG
GATGGAATATACCAAGAAATACTGAATTATCTGAATATTTCATAATAGTA
AAATTTCACCACTTTTCAAGTGTAAAGATAAATAAAATTACGAATTATGG
AAGATAGTCCATCATTTGTAATTTAAAACCAAAACAATGTATAATTTATA
ATTTACGAATTACTGCTCTCTGTTCATTGTGGTAATATATCAAATTTCAT
TAAATTATTTAATTTCTAGTGTTTTATCATGCATGCCTTCTCTGGCAACT
GAGAACCATGATTAATCTTTGGAGTAATGGAAATTCTTTAAAGGCCTTCC
TTCATAGCAGAGATTGAGAATAACTCAATTCCTTTGAGCCAGATGTTCAA
ACATTTTATTTTTTAATCCTTTCAATTATGTGTTACATCATTATGACAAG
GTCCTTAAAGTAAGAGCTTACATAGACTTCATGTGGATTTTGAATATTGT
TTCTGACTACAGAATTTTTGTGTTCAATAGGACATAATAAAAATATCTTG
ATATCTGTAGTAATCAATCTCCAGAAATTTTCATGATATCAATAGCTAAT
ATATATATATATATAT

Query= MSMg01no177_n10.g1 MSMg01no177_n10.g1 CHROMAT_FILE:
MSMg01no177_n10.g1 PHD_FILE: MSMg01no177_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:29 2005
         (640 letters)



>mm_chr1_31661471_31662509
          Length = 1039

 Score = 1205 bits (623), Expect = 0.0
 Identities = 635/639 (99%), Gaps = 1/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctttatgtgcgaaaagtgatagagaatactgaaaatttaaatttttgatctgaataa 60
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aacctttatgtgcaaaaagtgatagagaatactgaaaatttaaatgtttgatctgaataa 260

                                                                       
Query: 61  gttgtaggggacaggatggaatataccaagaaatactgaattatctgaatatttcataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtaggggacaggatggaatataccaagaaatactgaattatctgaatatttcataat 320

                                                                       
Query: 121 agtaaaatttcaccacttttcaagtgtaaagataaataaaattacgaattatggaagata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtaaaatttcaccacttttcaagtgtaaagataaataaaattacgaattatggaagata 380

                                                                       
Query: 181 gtccatcatttgtaatttaaaaccaaaacaatgtataatttataatttacgaattactgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccatcatttgtaatttaaaaccaaaacaatgtataatttataatttacgaattactgc 440

                                                                       
Query: 241 tctctgttcattgtggtaatatatcaaatttcattaaattatttaatttctagtgtttta 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctttgttcattgtggtaatatatcaaatttcattaaattatttaatttctagtgtttta 500

                                                                       
Query: 301 tcatgcatgccttctctggcaactgagaaccatgattaatctttggagtaatggaaattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatgcatgccttctctggcaactgagaaccatgattaatctttggagtaatggaaattc 560

                                                                       
Query: 361 tttaaaggccttccttcatagcagagattgagaataactcaattcctttgagccagatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaaaggccttccttcatagcagagattgagaataactcaattcctttgagccagatgt 620

                                                                       
Query: 421 tcaaacattttattttttaatcctttcaattatgtgttacatcattatgacaaggtcctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaacattttattttttaatcctttcaattatgtgttacatcattatgacaaggtcctt 680

                                                                       
Query: 481 aaagtaagagcttacatagacttcatgtggattttgaatattgtttctgactacagaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagtaagagcttacatagacttcatgtggattttgaatattgtttctgactacagaatt 740

                                                                       
Query: 541 tttgtgttcaataggacataataaaaatatcttgatatctgtagtaatcaatctccagaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgtgttcaataggacataataaaaatatcttgatatctgtagtaatcaatctccagaa 800

                                                  
Query: 601 attttcatgatatcaatagctaatatatatatatatata 639
           |||||||||||||||||||||||||||||||||| ||||
Sbjct: 801 attttcatgatatcaatagctaatatatatatat-tata 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space:   648270
Effective search space used:   648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)