BAC Information

Click to search

BAC

Clone NameMSMg01-177N21
Chromosome1 (Build37)
Map Location 157,697,293 - 157,854,702
singlet/doubletdoublet
Overlap geneCep350, LOC676894, Tor1aip1
Upstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6
Downstream geneIfrg15, Tor1aip2, A230106N23Rik, Tdrd5, Nphs2, 9430070O13Rik, LOC100038991, Soat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177N21.T7 (MSMg01no177_n21.b1)MSMg01-177N21.TJ (MSMg01no177_n21.g1)
ACCAG372129AG372130
length714770
length of high quality
(start - end)		372 (45 - 416)626 (134 - 759)
definitionCHROMAT_FILE: MSMg01no177_n21.b1 PHD_FILE: MSMg01no177_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:31 2005CHROMAT_FILE: MSMg01no177_n21.g1 PHD_FILE: MSMg01no177_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,697,293 - 157,697,659)(157,854,079 - 157,854,702)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCTGTCCTATGACATATTTTTTATACTTACAGTAGAAATAGCTCATG
ACAGTATTTGTCATGTCTCCAGTGTAATGTGGATAATGTGGATTCTCCCT
CAAATAAACGTCAAGGTTTTGTTGTTGTTTTTGTTTTTGTTTTGAGACAG
GGTTTCTATGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGG
CTGGCCTCGAACTCAGAAATCCAACTACCTCTGCCTCCCAAGTGCTGGGA
TTAAAGGTGTGTGCCACTACGCCTGGCAATCGTCAAGGTTTTAATGACTG
CAGAAGCGCTGTTCCTTAAGACCTTGCCAACAGTAACTATTGCTTTTTCC
CCAGAGGACAGCAGACTGCGCGGGGCTGAGTGGAGCCCAGCAGCACAGCA
CAGGCTTGGCATGCCACAAAGTCCCAGGTTCAATCCCCAGCACCACAGGT
TGGGAATCTTTTCTGTCTTGGAACCAACACACTTCCTTTTTGTCTAACTC
TCAGATCAAAGCCCACCATGGTACTACAATGACAGCCATAGATCTGCCTT
TTATTTCCTTCTAGTCTTCAGAGTCTACTATACACACACCCATCCAGAGA
TGTGTGTCTTTGTGTAAAGTACTTAAACAAATCCATTAGATTAAAAATAA
AAGTCAAACAGTGN

GGAAAAAAAAGAGGGGGAAAAAAGGGGGCGGGCCGTTTCCCGTTTAACTT
TTATACCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACCAGATGAAGCA
ACTCCAGTCTAAGTACCAGAGTCAAAACGAGAAGCTGTGGAAGAGAGGCA
CCACCTTCCTAGAAAAACATCTGAATAGCTCCCTCCCTCGGCCCCAGCCT
GCCATCCTGTTGCTCACTGCAGCTCAAGATGCTGCAGAAGTGCTCAAGTG
TCTGAGTGAACAAATTGCCGATGCCTACTCCTCCTTCCGTAGTGTCCGTG
CCATCCGGATTGACGGGGCAGGTAAAGCTGCTCAGGACAGTGACCTCGTT
AAGCATGAAGTCGATCAGGAGCTGACTGATGGATTTAAAAATGGCCAGAA
TGCAGCTGTGGTACACCGCTTCGAATCCCTGCCTGCTGGCTCAACCTTGA
TCTTCTATAAATACTGTGACCATGAAAATGCAGCCTTCAAAGATGTAGCC
CTCGTCCTGACTGTACTGTTGGAGGAGAAGACGCTGGAAGCCAGTTTAGG
CCTAAAGGAAATTGAAGAGAAAGTGAGGGATTTCCTTAAAGTCAAGTTCA
CCAGCTCTAGCACTGCCAGCTCCTACAACCACATGGACCCAGACAAGCTG
AATGGGCTCTGGAGCCGCATCTCCCACCTCGTGCTGCCTGTGCAGCCTGA
GAACACTTCTGAAGCATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_n21.b1 MSMg01no177_n21.b1 CHROMAT_FILE:
MSMg01no177_n21.b1 PHD_FILE: MSMg01no177_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:31 2005
         (372 letters)



>mm_chr1_157697088_157697859
          Length = 772

 Score =  694 bits (359), Expect = 0.0
 Identities = 365/367 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctgtcctatgacatattttttatacttacagtagaaatagctcatgacagtattt 65
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 206 gaattctgtcctatgaaatattttttatacttacagtagaaataactcatgacagtattt 265

                                                                       
Query: 66  gtcatgtctccagtgtaatgtggataatgtggattctccctcaaataaacgtcaaggttt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtcatgtctccagtgtaatgtggataatgtggattctccctcaaataaacgtcaaggttt 325

                                                                       
Query: 126 tgttgttgtttttgtttttgttttgagacagggtttctatgtgtagccctggctgtccta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgttgttgtttttgtttttgttttgagacagggtttctatgtgtagccctggctgtccta 385

                                                                       
Query: 186 gaactcactctgtagaccaggctggcctcgaactcagaaatccaactacctctgcctccc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaactcactctgtagaccaggctggcctcgaactcagaaatccaactacctctgcctccc 445

                                                                       
Query: 246 aagtgctgggattaaaggtgtgtgccactacgcctggcaatcgtcaaggttttaatgact 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aagtgctgggattaaaggtgtgtgccactacgcctggcaatcgtcaaggttttaatgact 505

                                                                       
Query: 306 gcagaagcgctgttccttaagaccttgccaacagtaactattgctttttccccagaggac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gcagaagcgctgttccttaagaccttgccaacagtaactattgctttttccccagaggac 565

                  
Query: 366 agcagac 372
           |||||||
Sbjct: 566 agcagac 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no177_n21.g1 MSMg01no177_n21.g1 CHROMAT_FILE:
MSMg01no177_n21.g1 PHD_FILE: MSMg01no177_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:31 2005
         (626 letters)



>mm_chr1_157853879_157854904
          Length = 1026

 Score = 1199 bits (620), Expect = 0.0
 Identities = 623/624 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaccagatgaagcaactccagtctaagtaccagagtcaaaacgagaagctgtggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 cagaaccagatgaagcaactccagtctaagtaccagagtcaaaacgagaagctgtggaag 765

                                                                       
Query: 61  agaggcaccaccttcctagaaaaacatctgaatagctccctccctcggccccagcctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 agaggcaccaccttcctagaaaaacatctgaatagctccctccctcggccccagcctgcc 705

                                                                       
Query: 121 atcctgttgctcactgcagctcaagatgctgcagaagtgctcaagtgtctgagtgaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 atcctgttgctcactgcagctcaagatgctgcagaagtgctcaagtgtctgagtgaacaa 645

                                                                       
Query: 181 attgccgatgcctactcctccttccgtagtgtccgtgccatccggattgacggggcaggt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 attgccgacgcctactcctccttccgtagtgtccgtgccatccggattgacggggcaggt 585

                                                                       
Query: 241 aaagctgctcaggacagtgacctcgttaagcatgaagtcgatcaggagctgactgatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaagctgctcaggacagtgacctcgttaagcatgaagtcgatcaggagctgactgatgga 525

                                                                       
Query: 301 tttaaaaatggccagaatgcagctgtggtacaccgcttcgaatccctgcctgctggctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tttaaaaatggccagaatgcagctgtggtacaccgcttcgaatccctgcctgctggctca 465

                                                                       
Query: 361 accttgatcttctataaatactgtgaccatgaaaatgcagccttcaaagatgtagccctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 accttgatcttctataaatactgtgaccatgaaaatgcagccttcaaagatgtagccctc 405

                                                                       
Query: 421 gtcctgactgtactgttggaggagaagacgctggaagccagtttaggcctaaaggaaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtcctgactgtactgttggaggagaagacgctggaagccagtttaggcctaaaggaaatt 345

                                                                       
Query: 481 gaagagaaagtgagggatttccttaaagtcaagttcaccagctctagcactgccagctcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaagagaaagtgagggatttccttaaagtcaagttcaccagctctagcactgccagctcc 285

                                                                       
Query: 541 tacaaccacatggacccagacaagctgaatgggctctggagccgcatctcccacctcgtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tacaaccacatggacccagacaagctgaatgggctctggagccgcatctcccacctcgtg 225

                                   
Query: 601 ctgcctgtgcagcctgagaacact 624
           ||||||||||||||||||||||||
Sbjct: 224 ctgcctgtgcagcctgagaacact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |