Query= MSMg01no178_b11.b1 MSMg01no178_b11.b1 CHROMAT_FILE:
MSMg01no178_b11.b1 PHD_FILE: MSMg01no178_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:48 2005
(487 letters)
>mm_chr1_142786846_142787732
Length = 887
Score = 810 bits (419), Expect = 0.0
Identities = 467/483 (96%), Gaps = 1/483 (0%)
Strand = Plus / Plus
Query: 6 aattcattgctgtcttggatgataggtcccttgtacaggatgctcatgtttggtaagcaa 65
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 206 aattcattgctgtcttggatgataggtcccttgtacaggatgctcatgtttggtaatcaa 265
Query: 66 accagagtttttctaagagttacagttgaattatcagtatattgctcttttcctttttaa 125
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 266 accagagtttttctaagagttacagttgaattgtcagtatattgctcttctcctttttaa 325
Query: 126 acccaaagaggtcttaataggttgcagaaacctcagtcatgtatgaccacatttgtgttg 185
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acccaaagaggtcttaataagttgcagaaacctcagtcatgtatgaccacatttgtgttg 385
Query: 186 tttaaaatgattatatgatcattttcaacaaagataacagtatgttatcaaaaagtcttt 245
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttaaaatgattatatgattattttcaacaaagataacagtatgttatcaaaaagtcttt 445
Query: 246 ggctattatatggaacttgtaaagaatatataaaataccaatcacagaagctccaaaaat 305
|||||||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||
Sbjct: 446 ggctattatatggaacttgtaaagaagaaataaaatactaatcagagaagctccaaaaat 505
Query: 306 ataaaatgaaataaaactagtcaatttttcc-ttttttcattagatattttatttacaat 364
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct: 506 ataaaatgaaataaaactagtcaattttttcattttttcataagatattttatttacaat 565
Query: 365 tatataacatttcaaatgttatcccctttcctactttccctctgaaaacctcctatcccc 424
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 566 tatataacatttcaaatgttatcccctttcctagtttccctctgaaaaccccctatcccc 625
Query: 425 tcccctttccccctgctccccaacccacccactcctacttcctgtccctggcattctact 484
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tccacattccccctgctccccaacccacccactcctacttcctgtccctggcattctact 685
Query: 485 ata 487
|||
Sbjct: 686 ata 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_b11.g1 MSMg01no178_b11.g1 CHROMAT_FILE:
MSMg01no178_b11.g1 PHD_FILE: MSMg01no178_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:48 2005
(283 letters)
>mm_chr1_142949843_142950525
Length = 683
Score = 495 bits (256), Expect = e-144
Identities = 272/278 (97%), Gaps = 3/278 (1%)
Strand = Plus / Minus
Query: 1 cagaggagaggtaggaaggagagagcaaagaaagagctggaagggccaaaggatgagtag 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 345 cagaggagaggtaggaaggagagagcaaagaaagagctggaagggaaaaaggatgagtag 286
Query: 61 aaatactgtaaatagagtatattcatgtatgacattctcacaagcatatcatgctgacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaatactgtaaatagagtatattcatgtatgacattctcacaagcatatcatgctgacct 226
Query: 121 tgatagaccatcaatggctcatgtgaaaataaataaataaactagtttttatttaaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 225 tgatagaccatcaatggctcatgtgaaaataaataaataaactagtttttattaaaaata 166
Query: 181 cctcttagtttcctccatgcatatattttgctttcaattgtttagctttataattttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cctcttagtttcctccatgcatatattttgctttcaattgtttagctttataattttttt 106
Query: 241 aatttattttttaattattttttttacactccagactt 278
||||||||||||| || ||||||||||||||||||||
Sbjct: 105 aatttatttttta-tt--tttttttacactccagactt 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
