Query= MSMg01no178_d08.b1 MSMg01no178_d08.b1 CHROMAT_FILE:
MSMg01no178_d08.b1 PHD_FILE: MSMg01no178_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:57 2005
(600 letters)
>mm_chr1_40861252_40862249
Length = 998
Score = 1029 bits (532), Expect = 0.0
Identities = 577/594 (97%), Gaps = 6/594 (1%)
Strand = Plus / Plus
Query: 5 gaattccatcatcaccatttgtaatcagaaggggtaggaaggtggcagtgcacggaagcc 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatcatcaggatttgtaatcagaaggggtaggaaggtggcagtgcacggaagcc 264
Query: 65 tccttacgtgattggaggaactgttgtgttcttactgagaagcaatgaagacaagagcca 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 tccttacgtgattggaggaactgttgtgttcttactgagaaacaatgaagacaagagcca 324
Query: 125 aatgaacacagtctaaatgataaagagcacacaaatacatctttaaagcacactggcata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatgaacacagtctaaatgataaagagcacacaaatacatctttaaagcacactggcata 384
Query: 185 tttagatatgtaaacagacaaatgaactgcaaagagacaaggacagaagtaagcacacag 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 tttagatatgtaaacagacaaatgaactgcaaagagacaagggcagaagtaagcacacag 444
Query: 245 ttgtttctgttgcgtcgtctgcatggatagcgggcatggtttatgtttcaggaaaatcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtttctgttgcgtcgtctgcatggatagcgggcatggtttatgtttcaggaaaatcag 504
Query: 305 gtgctaaaggtgaagaaaaaaaa--agaaagaaatctagaaaacaatatatcagaaacgt 362
|||||||||||||||||||||| || |||||| ||||||||||||||| |||||||
Sbjct: 505 atgctaaaggtgaagaaaaaaaataag---gaaatccagaaaacaatatatcggaaacgt 561
Query: 363 aaattcagctgcggcatagttatttagaacaaactggtttgtgagctaccagaaaacaga 422
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaattcagctgtgggatagttatttagaacaaactggtttgtgagctaccagaaaacaga 621
Query: 423 cttttatgtccctatcggcggctaaataacattaatttttgttctttcaggaattgtatt 482
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 622 cttttatgtccctatcggcggctaaataacattaatttttgttctttaaggaattgtatt 681
Query: 483 gccatggctataagtgatcttagacctcatttgattttgaatatcaagtgatttttacat 542
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gccatggctataagtgatattagacctcatttgattttgaatatcaagtgatttttacat 741
Query: 543 atcatttgaatgtatgagttatacacctaggccaaagcctagatttcctcttcc 596
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 742 atcatttgaatgtatgagttatacacctaggccaa-gcctagatttcctcttcc 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 998
Length adjustment: 10
Effective length of query: 590
Effective length of database: 988
Effective search space: 582920
Effective search space used: 582920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_d08.g1 MSMg01no178_d08.g1 CHROMAT_FILE:
MSMg01no178_d08.g1 PHD_FILE: MSMg01no178_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:57 2005
(292 letters)
>mm_chr1_41011482_41012173
Length = 692
Score = 549 bits (284), Expect = e-161
Identities = 290/292 (99%)
Strand = Plus / Minus
Query: 1 tcgctagccctcagcagagatgtctgcctgtgcaaaacctgtgaccaaggactgaaatga 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 492 tcgctagccctcagcagagatgtctgcctgtgcaaaacctgtgacaaaggactgaaatga 433
Query: 61 cagcgctccgactccctcctacattgtgtttgtttaggaaggtcctagaaattgtatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cagcgctccgactccctcctacattgtgtttgtttaggaaggtcctagaaattgtatttc 373
Query: 121 accaaccacattcgctatcaacacacaattatctggcttaatcatgtggaacagtggcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 accaaccacattcgctatcaacacacaattatctggcttaatcatgtggaacagtggcaa 313
Query: 181 attcacctggggcttaagaactaatgacattctcgtctgagctgctttagtgaaatggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 attcacctggggcttaagaactaatgacattctcgtctgagctgctttagtgaaatggcc 253
Query: 241 ccgcacctgaagcaggaacagcaagattgctcaagaaaatttgtttttctgt 292
||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 252 ccgcacctgaagcaggaacagcaagattgctcaagaaaatttggttttctgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
