Query= MSMg01no178_d11.b1 MSMg01no178_d11.b1 CHROMAT_FILE:
MSMg01no178_d11.b1 PHD_FILE: MSMg01no178_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:57 2005
(625 letters)
>mm_chr1_182402468_182403491
Length = 1024
Score = 1127 bits (583), Expect = 0.0
Identities = 615/633 (97%), Gaps = 13/633 (2%)
Strand = Plus / Minus
Query: 5 gaattccatctggccatttgtgctagtcagctttccgccattcattgtagcagagtaccc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 gaattccatctgggcatttgtgctagtcagctttccgccattcattgtagcagagtaccc 696
Query: 65 gagacaatcagctgacaaagagaataggtttattttggcccatagtcttggagttgccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gagacaatcagctgacaaagagaataggtttattttggcccatagtcttggagttgccag 636
Query: 125 tgcatgctttgggactgtggtgaggttccatcacggcaggaacacgtggtggagtcaagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgcatgctttgggactgtggtgaggttccatcacggcaggaacacgtggtggagtcaagt 576
Query: 185 tctcacctggagagaaaaactgctcaaaagagagagaaaaagaagcctcactccccccgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tctcacctggagagaaaaactgctcaaaagagagagaaaaagaagcctcactccccccgc 516
Query: 245 ccccaagggatgatgtaagatcctctgactaggctaagggttcatactgactaagctaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ccccaagggatgatgtaagatcctctgactaggctaagggttcatactgactaagctaat 456
Query: 305 ggtttcacggtgcgggccacacttttgacacttgggcctttagagcaaggtgcaaactat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggtttcacggtgcgggccacacttttgacacttgggcctttagagcaaggtgcaaactat 396
Query: 365 agcgccacctgaccagacaggccacatccagtatgccagggcaagaagagccaagagtct 424
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agcggtacctgaccagacaggccacatccagtatgccagggcaagaagagccaagagtct 336
Query: 425 ccagggttttttttaaacaaaccaagaaggcatctgtgtgatacttccatatccaggagg 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ccaggg-tttttttaaacaaaccaagaaggcatctgtgtgatacttccatatccaggagg 277
Query: 485 tgtgtattgaggctaactttacaatttgtcaaaaggccatggaagcagtaaagtggggct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgtgtattgaggctaactttacaatttgtcaaaaggccatggaagcagtaaagtggggct 217
Query: 545 cactttacctat------------acacacacacacacacacacacatacacacacccct 592
|||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 216 cactttacctatacacacacacacacacacacacacacacacacacacacacacacccct 157
Query: 593 acctctgtagctatgcctatggctattttgcta 625
|||||||||||||||||||||| ||||||||||
Sbjct: 156 acctctgtagctatgcctatggttattttgcta 124
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1024
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1014
Effective search space: 623610
Effective search space used: 623610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_d11.g1 MSMg01no178_d11.g1 CHROMAT_FILE:
MSMg01no178_d11.g1 PHD_FILE: MSMg01no178_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:57 2005
(340 letters)
>mm_chr1_182244045_182244781
Length = 737
Score = 567 bits (293), Expect = e-166
Identities = 330/347 (95%), Gaps = 13/347 (3%)
Strand = Plus / Plus
Query: 1 acactcctgatag-t---ccatgtttctgacttgtctctggctgagactctgtctttgca 56
||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 197 acactcctgatagatagcccatgtttctgacttgtctctggctgaaactctgtctttgca 256
Query: 57 cccttctgttgttttgtctgccccttctcgctttgtttctcagaagtccttgtttttaag 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cccttctgttgttttgtctgccccttctcgctttgtttctcagaagtccttgtttttaag 316
Query: 117 tgatgtgttggggttctacttcctgtgaatctacccacaacaacagctgaggagtgaaca 176
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 317 tgatgtgctggggttctacttcctgtgaatctacccacaaca---gctgaggagtgaaca 373
Query: 177 cagggctttaattccaggccgactgagttcaaacaagtctccacagctgtgcgtcagttc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cagggctttaattccaggccgactgagttcaaacaagtctccacagctgtgcgtcagttc 433
Query: 237 atctctctgagtctagtctgactgttctcgtcagttttaaaacggtttt--a-taatatt 293
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 434 atctctctgagtctagtctgactgttctcgtcagttttaaaacggt---ggactaatatt 490
Query: 294 acccaccaattttcatcccttcttttcaataaacctgggtattcacc 340
||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acccaataattttcatcccttcttttcaataaacctgggtattcacc 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 737
Length adjustment: 9
Effective length of query: 331
Effective length of database: 728
Effective search space: 240968
Effective search space used: 240968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
