BAC Information

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BAC

Clone NameMSMg01-178D24
Chromosome1 (Build37)
Map Location 65,966,926 - 65,985,697
singlet/doubletdoublet
Overlap geneCrygf
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneLOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178D24.T7 (MSMg01no178_d24.b1)MSMg01-178D24.TJ (MSMg01no178_d24.g1)
ACCAG372394AG372395
length750742
length of high quality
(start - end)		696 (46 - 741)669 (74 - 742)
definitionCHROMAT_FILE: MSMg01no178_d24.b1 PHD_FILE: MSMg01no178_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:00 2005CHROMAT_FILE: MSMg01no178_d24.g1 PHD_FILE: MSMg01no178_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,985,164 - 65,985,697)(65,966,926 - 65,967,593)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCACTAAATTATTTTCAAGTCTAAGAATACTTATATCATGTGTA
GTAAGATATCCAAAGAGAGGGTCAGCAGCATGCTTGGTTAAACTAGGGTT
ACAGTTTCCCTGCAGTTTCTGTGATATGTCTTTTTTGCACATGTTGGCCT
TATTAAATCGATAATGTGACTCTTTGAAAGCTTAAATGGACCTTCTGGAT
CTCACAATAAGTACCATAGTGACTCATGATGTGCCAGAGCAAAGGGAAAG
CTTTATTGCAGTTATAAAATAATGTGGCTTTCCTCAGTCAAATTGAGACA
TTTAGACAATATAACAATGTTTTAAAAGATTTGTTTCATGTGTATGAGTG
TTTTGCCTGCATGTATGTCTGTATACTTCAAGAATATCTACTGCCCATGG
AGGTTAGAAGAGGGACTCAGGTACCCTGGATGATTAAGTTAAGGATGATT
GTGAGTTACTAGTGGGTATTGTCAACCAAACCCAGTTCTCTGCATGAACA
AATGTTCTTATCATTTAGCCAATTAATCGAGTCCTGATGCATCAACTTTT
ATCTGGTACCAGTCATGTGAAAATACTGTAACTTTTGTTGGAAATAGTTC
TACCTTAAGGTCCAGCTATACCACGACTGGGCATATACCCAAAAAATGCT
CCACCATATCAAAAAGACATATACTCCACTATGTTCGTAGCAGCCTTATT


CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATAATCTACCAGAATATACAATGTTA
ATTGTTTCTCTATTCACAATACCTAGAACTCTGAAAACAGCCTCATTGAC
TATGACTAGATAATGAAAGAATAATAAGACACACAATGCAATTTTATACA
GATGTAAGGAAAAATGAAAATGTCACATAAATGGATGGAACTGGAGAACA
TTATATTGTAAGAGGTCACTCAGATAAGGAATGATGCATCTTTTGACTCA
TGTTGATCCTACTGTTGATTCTTTAGATCTTTGTGTTCAACTCAGATCAC
CTGTAGAACACAAGGAACTAAAAGAGATCATTTGTTGCAAGGGAGAAGAA
TGAGACTAAGAGGTGGGGATAGCAGAACACAGATAATATTAAGGGAAGAG
GGAATAACAGGAAAGGAGGTGTAAATAGCAGGACTACTCTTTGAGAATAC
AAAGGACATTATCTTAACACTAACATGATAAGAGTATGAAAGAAATTTCT
CTAAATAAATTTCTATCTATTAATATAATTACATTGGAGCGGAGAGTTGA
TTTATCCATTAAACTAAATATTGATCTGAAAAAATAAAAACAAATGTAGC
TATTCATTTTCCAATTTCTGCTTAAGCAGAATAAACACATCACGAAATCA
ATCTGATTTTCATTGTAACTGCTCTCTGGCATTTACTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_d24.b1 MSMg01no178_d24.b1 CHROMAT_FILE:
MSMg01no178_d24.b1 PHD_FILE: MSMg01no178_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:00 2005
         (696 letters)



>mm_chr1_65985164_65986259
          Length = 1096

 Score = 1033 bits (534), Expect = 0.0
 Identities = 534/534 (100%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcctcactaaattattttcaagtctaagaatacttatatcatgtgtagtaagatatc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aattcctcactaaattattttcaagtctaagaatacttatatcatgtgtagtaagatatc 475

                                                                       
Query: 66  caaagagagggtcagcagcatgcttggttaaactagggttacagtttccctgcagtttct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 caaagagagggtcagcagcatgcttggttaaactagggttacagtttccctgcagtttct 415

                                                                       
Query: 126 gtgatatgtcttttttgcacatgttggccttattaaatcgataatgtgactctttgaaag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtgatatgtcttttttgcacatgttggccttattaaatcgataatgtgactctttgaaag 355

                                                                       
Query: 186 cttaaatggaccttctggatctcacaataagtaccatagtgactcatgatgtgccagagc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cttaaatggaccttctggatctcacaataagtaccatagtgactcatgatgtgccagagc 295

                                                                       
Query: 246 aaagggaaagctttattgcagttataaaataatgtggctttcctcagtcaaattgagaca 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaagggaaagctttattgcagttataaaataatgtggctttcctcagtcaaattgagaca 235

                                                                       
Query: 306 tttagacaatataacaatgttttaaaagatttgtttcatgtgtatgagtgttttgcctgc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tttagacaatataacaatgttttaaaagatttgtttcatgtgtatgagtgttttgcctgc 175

                                                                       
Query: 366 atgtatgtctgtatacttcaagaatatctactgcccatggaggttagaagagggactcag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atgtatgtctgtatacttcaagaatatctactgcccatggaggttagaagagggactcag 115

                                                                       
Query: 426 gtaccctggatgattaagttaaggatgattgtgagttactagtgggtattgtcaaccaaa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gtaccctggatgattaagttaaggatgattgtgagttactagtgggtattgtcaaccaaa 55

                                                                 
Query: 486 cccagttctctgcatgaacaaatgttcttatcatttagccaattaatcgagtcc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  cccagttctctgcatgaacaaatgttcttatcatttagccaattaatcgagtcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_d24.g1 MSMg01no178_d24.g1 CHROMAT_FILE:
MSMg01no178_d24.g1 PHD_FILE: MSMg01no178_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:00 2005
         (669 letters)



>mm_chr1_65966726_65967794
          Length = 1069

 Score = 1292 bits (668), Expect = 0.0
 Identities = 668/668 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataatctaccagaatatacaatgttaattgtttctctattcacaatacctagaactctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataatctaccagaatatacaatgttaattgtttctctattcacaatacctagaactctg 260

                                                                       
Query: 61  aaaacagcctcattgactatgactagataatgaaagaataataagacacacaatgcaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacagcctcattgactatgactagataatgaaagaataataagacacacaatgcaatt 320

                                                                       
Query: 121 ttatacagatgtaaggaaaaatgaaaatgtcacataaatggatggaactggagaacatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatacagatgtaaggaaaaatgaaaatgtcacataaatggatggaactggagaacatta 380

                                                                       
Query: 181 tattgtaagaggtcactcagataaggaatgatgcatcttttgactcatgttgatcctact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattgtaagaggtcactcagataaggaatgatgcatcttttgactcatgttgatcctact 440

                                                                       
Query: 241 gttgattctttagatctttgtgttcaactcagatcacctgtagaacacaaggaactaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgattctttagatctttgtgttcaactcagatcacctgtagaacacaaggaactaaaa 500

                                                                       
Query: 301 gagatcatttgttgcaagggagaagaatgagactaagaggtggggatagcagaacacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagatcatttgttgcaagggagaagaatgagactaagaggtggggatagcagaacacaga 560

                                                                       
Query: 361 taatattaagggaagagggaataacaggaaaggaggtgtaaatagcaggactactctttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatattaagggaagagggaataacaggaaaggaggtgtaaatagcaggactactctttg 620

                                                                       
Query: 421 agaatacaaaggacattatcttaacactaacatgataagagtatgaaagaaatttctcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaatacaaaggacattatcttaacactaacatgataagagtatgaaagaaatttctcta 680

                                                                       
Query: 481 aataaatttctatctattaatataattacattggagcggagagttgatttatccattaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aataaatttctatctattaatataattacattggagcggagagttgatttatccattaaa 740

                                                                       
Query: 541 ctaaatattgatctgaaaaaataaaaacaaatgtagctattcattttccaatttctgctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaaatattgatctgaaaaaataaaaacaaatgtagctattcattttccaatttctgctt 800

                                                                       
Query: 601 aagcagaataaacacatcacgaaatcaatctgattttcattgtaactgctctctggcatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagcagaataaacacatcacgaaatcaatctgattttcattgtaactgctctctggcatt 860

                   
Query: 661 tactcctc 668
           ||||||||
Sbjct: 861 tactcctc 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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