Query= MSMg01no178_j08.b1 MSMg01no178_j08.b1 CHROMAT_FILE:
MSMg01no178_j08.b1 PHD_FILE: MSMg01no178_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:25 2005
(550 letters)
>mm_chr1_115008101_115009050
Length = 950
Score = 988 bits (511), Expect = 0.0
Identities = 534/547 (97%), Gaps = 10/547 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcttgtttctcagaaatgaggctttccgggttgtgctttttctttcagtgaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttgtttctcagaaatgaggctttccgggttgtgctttttctttcagtgaat 263
Query: 64 taggaatctgttcctactgaaatgaggagtaaatccctaaacagagactcttcctgagtc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taggaatctgttcctactgaaatgaggagtaaatccctaaacagagactcttcctgagtc 323
Query: 124 cactgtgtaggctattcaataaatgtgcctgaaaatcattctacatggctcctaagccat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cactgtgtaggctattcaataaatgtgcctgaaaatcattctacatggctcctaagccat 383
Query: 184 gcagagtggttgaagagagttggtaaagtacttatgacacaagcaagaggacctgaatat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcagagtggttgaagagagttggtaaagtacttatgacacaagcaagaggacctgaatat 443
Query: 244 tatcccccaagccacataaaatgtgtgcccttgtgatcccactgctgaaaaattgagact 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 tatcccccaagccacataaaatgtgtgcccttgtgataccactgctgaaaaattgagact 503
Query: 304 agtagatacataatggttcacagagcagccagcctagcctgcttgataggttccaagcca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtagatacataatggttcacagagcagccagcctagcctgcttgataggttccaagcca 563
Query: 364 ctaagtgaccatgaccagatctgagaaaaactaataaaatttaaaaagacagaggagaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctaagtgaccatgaccagatctgagaaaaactaataaaatttaaaaagacagaggagaga 623
Query: 424 aagaaagaaagaaagaaagaaagaaagagagagagagagagagagagacaaagagagaga 483
|||||||||||| ||| ||| |||||||||||||||||||||| ||||||||
Sbjct: 624 aagaaagaaagagagagaga------gagagagagagagagagagaga----gagagaga 673
Query: 484 gagagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gagagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 733
Query: 544 aagaaag 550
|||||||
Sbjct: 734 aagaaag 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_j08.g1 MSMg01no178_j08.g1 CHROMAT_FILE:
MSMg01no178_j08.g1 PHD_FILE: MSMg01no178_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:25 2005
(486 letters)
>mm_chr1_115141507_115142388
Length = 882
Score = 758 bits (392), Expect = 0.0
Identities = 461/486 (94%), Gaps = 5/486 (1%)
Strand = Plus / Minus
Query: 1 ttcctgcacgaactcaactctgggaaggtcagataaatggatgatggatactgtcctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttcctgcacgaactcaactctgggaaggtcagataaatggatgatggatactgtcctgag 538
Query: 61 agtctgatgtgttacagagatggttttctgattgacctgtacttgcttctgggaccaaca 120
|| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 537 agcctgatgtgttacaaagatggttgtctgattgacctgtacttgcttctgggaccaaca 478
Query: 121 aaatcttctaccagggtttggtgagacaaaagcataaggaccttccacactacagcatat 180
||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||
Sbjct: 477 aaatcatctaccaggatttggtg----ataagcataaggaccttccacactacagcatat 422
Query: 181 tcttttgtttgtttgtttgttttacctctttcattgtggcttttctgggaattcagagga 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 421 tcatttgtttgtttgtttgttttacctctttcattgtggcttttctgggaattcggagga 362
Query: 241 cataattaagagcactaagatagatacagttagaatgtggttatgggatccattgatctt 300
|| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 361 cagaattaagagcactaagatggatacagttagaatgtttttatgggatccattgatctt 302
Query: 301 gaacacactcacacggatctagtaaatatattatggaaattgcaggaggaacaaaaagct 360
||||| |||||||| ||||||||||||||||||||||| ||| |||||| || |||||||
Sbjct: 301 gaacagactcacacagatctagtaaatatattatggaatttggaggagggactaaaagct 242
Query: 361 tacctcacaagggtgtcacattgatctttccttgagagcccattttttaaaataaattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tacctcacaagggtgtcacattgatctttccttgagagcccattttttaaaataaattat 182
Query: 421 aaatagagacaagttatgtaaagctcacaaaaaatatatttatggcactgagtattaaat 480
|| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 181 aattagagacaagttatgtaaagctcac-aaaaatgtatttatggcactgagtattaaat 123
Query: 481 ataaag 486
||||||
Sbjct: 122 ataaag 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 882
Length adjustment: 10
Effective length of query: 476
Effective length of database: 872
Effective search space: 415072
Effective search space used: 415072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
