Query= MSMg01no178_o14.b1 MSMg01no178_o14.b1 CHROMAT_FILE:
MSMg01no178_o14.b1 PHD_FILE: MSMg01no178_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:48 2005
(615 letters)
>mm_chr1_54826219_54827233
Length = 1015
Score = 1075 bits (556), Expect = 0.0
Identities = 598/612 (97%), Gaps = 1/612 (0%)
Strand = Plus / Minus
Query: 5 gaattccctagtctcatctcccaaaagaataagtttgtgaatcatcttgaatattttatt 64
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gaattctctagtcttatctcccaaaagaataagtttgtgaatcatcttgaatattttatt 613
Query: 65 ttatatgtcctaaattcacctaacggaagcaagaacccacacaagcacagtgaaatgaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttatatgtcctaaattcacctaacggaagcaagaacccacacaagcacagtgaaatgaca 553
Query: 125 ctgaaccaaggcaaagatgttcaagtgactgtgtattattgctttgctgtgagtgtgaga 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 552 ctgaaccaaggcaaagatgttcaagtgactgtgtattattggtttgctgtgagtgtgaga 493
Query: 185 aatgggtgctaccattttatgtcctgtatccacaatatacacagaatagcatgtatgtcc 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 492 aatgggtgctaccattttatgtcctgtatccacaatatacacaaaatagcatgtatgtcc 433
Query: 245 aagataggataatttatttaccttttgcttatacaatcatgaaggtaatagtcttctaat 304
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagataggataatttatttatcttttgcttatacaatcatgaaggtaatagtcttctaat 373
Query: 305 ggcttttctctgccttggccatgctcttgtcagagctgattaagcctgtcactgcttttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 372 ggcttttctctgccttggccatgctcttgtcagagctgattaagcctgtcactgcttgtt 313
Query: 365 actccccactacaaatagtgtaaagcttcccccagagctataagaagcttcagggctggg 424
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 312 actcccaactacaaatagtgtaaagcttcccccagagctgtaagaagcttcagggctagg 253
Query: 425 actatactcgctgttactgttgctatctctggtccttgggtaccttgcacagacctgttc 484
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 252 actatacttgctgttactgttgctatctctggtccttgggtaccttgcacagacctcttc 193
Query: 485 ctccatcccccaatattgggaattgagcctagggcttcatactctagacaagcattcttt 544
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 192 ctccatcccccaatattgggaattgagcctagggcctcatactctagacaagcattcttt 133
Query: 545 caataagctatatccctgtcttacggtttctattgctgtgaagagaccc-atgaccacct 603
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 132 caataagctatatccctgtcttagggtttctattgctgtgaagagaccccatgaccacct 73
Query: 604 cttataaaggaa 615
||||||||||||
Sbjct: 72 cttataaaggaa 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_o14.g1 MSMg01no178_o14.g1 CHROMAT_FILE:
MSMg01no178_o14.g1 PHD_FILE: MSMg01no178_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:48 2005
(599 letters)
>mm_chr1_54719984_54720982
Length = 999
Score = 1093 bits (565), Expect = 0.0
Identities = 588/599 (98%), Gaps = 6/599 (1%)
Strand = Plus / Plus
Query: 1 tttattatttccaggacagaaaccaactctccaggtctgccattttgctattattagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tttattatttccaggacagaaaccaactctccaggtctgccattttgctattattagaaa 266
Query: 61 gtgggtaagtggtaggtagctttaaatgtcaaaggtagagccgggtgtggtgacgcacga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 267 gtgggtaagtggtaggtagctttaaatgtcaaaggtagagccgggtgtggtgacgcatgc 326
Query: 121 ctttaatctcagcactcaggaggcagaggcaggcagatttctgagtttgaggccagcctg 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 327 ctttaatctcagcactcaggaggcagaggcaggcagatttctgagttcgaggccagcctg 386
Query: 181 gtctacagagtgagtgccaggccagccagggctacacagagaaaccctgtcttgaaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtctacagagtgagtgccaggccagccagggctacacagagaaaccctgtcttgaaaaac 446
Query: 241 aaaaacagaaacaaaaacaaaaacaaaaacaaatgtcagaggtaggaagaaagaggaaat 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaaaacag------aaacaaaaacaaaaacaaatgtcagaggtaggaagaaagaggaaat 500
Query: 301 actaacgactgggaagcatggctagagcagtgataaaaaggcactcactgtcaataagac 360
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 501 actaacgactgggaagcatggctagagcagggataaaaaggcgctcactgtcaataagac 560
Query: 361 gcgcacactgagtgctttcttccctttagtacaggctctggtggcgggccacacctcggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcgcacactgagtgctttcttccctttagtacaggctctggtggcgggccacacctcggg 620
Query: 421 gttctaggctcctgacccatgagtttcacagagaggtgctatcctagaactcagcactca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttctaggctcctgacccatgagtttcacagagaggtgctatcctagaactcagcactca 680
Query: 481 tccctatccactactcaacaagccaaccaagctgctcctgtgactgatcatagcagaagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccctatccactactcaacaagccaaccaagctgctcctgtgactgatcatagcagaagg 740
Query: 541 ccaacatgaaaacacttactgtcccttggcatctttcacatcaaccacttccggattgt 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaacatgaaaacacttactgtcccttggcatctttcacatcaaccacttccggattgt 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
