BAC Information

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BAC

Clone NameMSMg01-179C14
Chromosome1 (Build37)
Map Location 165,307,325 - 165,307,620
singlet/doubletsinglet
Overlap genenone
Upstream geneDnm3, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597
Downstream geneScyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179C14.T7 (MSMg01no179_c14.b1)MSMg01-179C14.TJ (MSMg01no179_c14.g1)
ACCAG373032AG373033
length781748
length of high quality
(start - end)
448 (48 - 495)478 (76 - 553)
definitionCHROMAT_FILE: MSMg01no179_c14.b1 PHD_FILE: MSMg01no179_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:06 2005CHROMAT_FILE: MSMg01no179_c14.g1 PHD_FILE: MSMg01no179_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGG
AATTCTTTGGAGCTTCCGAGGTGGAAGGTGTACTTTCTGTTATAGTAACT
TTTTATTTAACTACTTCATTCCCACACGAAACCTCCTACAGATGCAATAA
AAGTTGAAGGAGCATGGCGGGTCTGTTGGGCTCCTCTGTTGGGGGACAGT
TACTGGACAAATTTGTTGAGCAGCTGGAATCGTTAAGGCCACACTAACAT
TGAAAAATGAAGGTCCTGACATCAACATACTCCAAGATCTGAATAATCTT
GGGCTGCTTCCAATTTTGAAACCTTTTCTGCTGGGCCTCTCATTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTCCCCCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCCAT
AGTGGCTTCTGACTTTTCCCCTTTGCCCAATGAGCCCCCCTCTATGTGGC
ACTTTTTCATCCCTTTTATTTTCCTCGTACCGCTATTACGTTCCTATGTT
CCTAATCTTTAGCTTTACCCCCTTTAACCACTCTTCTGCTACTTCTTGTT
TATTCTTATCTTTCATGTCTCTCCATTCACTCCCCGCTTTTTTATCTCCC
CCCGCCCCGCTCTACTCTCCTATTTTTTTTTCTCTCCGCTTAACTCTACC
TACCCCTTATTTTTTGATATTTACTCCTCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTGATTCCATCCTTTGAATCT
GTGCTTTTTACACAATGGGAGTTTTTGTTATTCCAGCTCTGTTTAAATTA
TTGATTTAATCTAGGTTTAAGTTTGGTGGATAGAATATATCCAGATTTTT
TTTTTTTTAGATTTCTAATGTAATGGACTATGGCCTTTAAAGGTTTGCCA
TTATAGTCTCTAAATTCTCTAAATTTCTATGATATCTACCATAATGTCCA
GACAAATCACAAATCTGATTAAATATGATTTTCTCTTTCTTTTTGTTTAG
TTGGCATCAGTTTATCCATAATATTTATTTTTTCAATGACCCAACTCTTT
ATCTCACTAATTATTTGCATTGGTTTTTGTTGTGATTTTTTTTTCTGTTT
CACCAATTTTCCCCCTGGCCTTAATTATTTCTTCCCATCCTTTGCTTTCA
ACTTGGTTTGTTCACATTTTCCCTGAGTCTTAAAGTGTTCACTTATTTGA
GTTCTCTCTGATACGTGAATGTAGGTCATTAGAGTTATAAAATTCCTTAT
TAAGACTGCTTACATTATATCCCAGAGGTTTTGATGCTGTGTGTTCGTGT
GTGTTTGTCTCCCCCTCCTTTATTTTCCCTCCCCCCTTCTTTTCCCTTTT
TCTTTATATTCCCTTTCTTCTTTCTTTTTCCCCTTATCTTTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_c14.b1 MSMg01no179_c14.b1 CHROMAT_FILE:
MSMg01no179_c14.b1 PHD_FILE: MSMg01no179_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:06 2005
         (448 letters)



>mm_chr1_165307105_165307952
          Length = 848

 Score =  557 bits (288), Expect = e-163
 Identities = 294/296 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  gaggtggaaggtgtactttctgttatagtaactttttatttaactacttcattcccacac 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gaggtggaaggtgtactttctgttatagtaactttttatttaactacttcattcccacac 280

                                                                       
Query: 81  gaaacctcctacagatgcaataaaagttgaaggagcatggcgggtctgttgggctcctct 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gaaacctcctacagatgcaataaaagttgaaggagcatggcgggtctgttgggctcctct 340

                                                                       
Query: 141 gttgggggacagttactggacaaatttgttgagcagctggaatcgttaaggccacactaa 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gttgggggacagttactggacaaatttgttgagcagctggaatcgttaaggccacactaa 400

                                                                       
Query: 201 cattgaaaaatgaaggtcctgacatcaacatactccaagatctgaataatcttgggctgc 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cattgaaaaatgaaggtcctgacatcaacatactccaagatctgaataatcttgggctgc 460

                                                                   
Query: 261 ttccaattttgaaaccttttctgctgggcctctcatttctttctttctttctttct 316
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttccaattttgaaacccattctgctgggcctctcatttctttctttctttctttct 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)