BAC Information

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BAC

Clone NameMSMg01-179D03
Chromosome1 (Build37)
Map Location 102,511,012 - 102,630,161
singlet/doubletdoublet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179D03.T7 (MSMg01no179_d03.b1)MSMg01-179D03.TJ (MSMg01no179_d03.g1)
ACCAG373056AG373057
length722734
length of high quality
(start - end)		679 (42 - 720)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no179_d03.b1 PHD_FILE: MSMg01no179_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:09 2005CHROMAT_FILE: MSMg01no179_d03.g1 PHD_FILE: MSMg01no179_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,629,486 - 102,630,161)(102,511,012 - 102,511,300)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCAGATAGACGGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTCT
AATCAAACTTATGCTAACACTCACCTATGTTCCATCCTTTGATATAAAAA
CCTTTCCAAGACATTTCATTTTTCTGTCTGAATTAATTTTTCTGGCTCTG
AGTGAGTAAAACTCTCTAAATGTTGAGCTCGATTGTGGATAAAGTGTTTG
TAGTGTAAGAATGGGACCCTGATTTTGAACCCTCAACATCCAAATAAAAA
AGAAACAGATATGGTTGGACTCCTGGAATGCCAGCACACTTAGTGACATG
CAGATTGTGAGGCCAGCTAGTCTATTAAAATTGATGAAATGAAGGTTATG
TGAGTGATCCAATACAAAAATATAAGGTGAAGAAGAATTGAAGAAGATGC
CTGGTGATGAGCTCTCACCTATATGCACATGTTCACACACATAGGTAGTC
ACAAGAGCTTGGGCACACATGCTTTCAAGCATGAATAGACACACAATCTC
TACAGACTTTTCTAACTACATAATTATCCAAGGTTCTAAATGTTTCCTCT
ATTGTTGCTGAAGAAAATCTTCATCACACCTACACCTCAGCCTGTACTTA
ATTATAGCCTTTGAAACATAACACTTAACCCCTCATTCATGTTTCAACCA
CTAGGTGACTCCTATGGAAATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGAGGACAAATGAGAAAGTATAAATGTGACA
GCAATGAGAGGATCTGGCCTGGCTCCTCCTCTACCTGCTTTCCCTACTGC
CCGAAGTATATGCTGCTCTTGATTCCTGCTTCTGCTGGTTCCTGTAGTTG
CTGCTTCCTCCTGGTTTATTTGCTTCTTTTGCTATTGTTGGATGCTGGGT
TGCTGGATTGCTGGATTTCAGAGTTGCTGGATTGCTGGTTACTGGTTGGA
GATATCCTGAAGACAAAGATTAGACTTGCCCCTAGGTACTTGTAGAACTT
GAAGAATGTTATCAGCACACACGCATCTAAAGAGATCTATGCTCCCTTTA
CACTTTAACCTTCTTTCTCTTCTACATAGTGTGGGGGTTGGAAGGGATTA
AGGGGGGCTAGGTAGAAAATGGTGGTATGTTTNGTNTTTTTTTTTTTTTA
TTTATTTTCGTAATGCGTTTTTTTTTATTATATTTTTATTTCGTTTTATT
TTTATATTATANTTATATACGTATTTTTGTATATGGTTATATATATTATT
TATTATATTTATCCCTTATTTAACATTTTATTAATCCCATCCTCTCAGAC
TATCTTTATATTCTATCTTCACCCTTTTCCCCCTCTTTCATTTTTATTTA
TACTATTTTACTCTCACCCCTCTATTTACCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_d03.b1 MSMg01no179_d03.b1 CHROMAT_FILE:
MSMg01no179_d03.b1 PHD_FILE: MSMg01no179_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:09 2005
         (679 letters)



>mm_chr1_102629229_102630307
          Length = 1079

 Score = 1292 bits (668), Expect = 0.0
 Identities = 674/676 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccagatagacggtttgtttgtttgtttgtttgtttgtttgtttgttctaatc 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 ggaattctccagatagatggtttgtttgtttgtttgtttgtttgtttgtttgttctaatc 874

                                                                       
Query: 64  aaacttatgctaacactcacctatgttccatcctttgatataaaaacctttccaagacat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 aaacttatgctaacactcacctatgttccatcctttgatataaaaacctttccaagacat 814

                                                                       
Query: 124 ttcatttttctgtctgaattaatttttctggctctgagtgagtaaaactctctaaatgtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ttcatttttctgtctgaattaatttttctggctctgagtgagtaaaactctctaaatgtt 754

                                                                       
Query: 184 gagctcgattgtggataaagtgtttgtagtgtaagaatgggaccctgattttgaaccctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gagctcgattgtggataaagtgtttgtagtgtaagaatgggaccctgattttgaaccctc 694

                                                                       
Query: 244 aacatccaaataaaaaagaaacagatatggttggactcctggaatgccagcacacttagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aacatccaaataaaaaagaaacagatatggttggactcctggaatgccagcacacttagt 634

                                                                       
Query: 304 gacatgcagattgtgaggccagctagtctattaaaattgatgaaatgaaggttatgtgag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gacatgcagattgtgaggccagctagtctattaaaattgatgaaatgaaggttatgtgag 574

                                                                       
Query: 364 tgatccaatacaaaaatataaggtgaagaagaattgaagaagatgcctggtgatgagctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tgatccaatacaaaaatataaggtgaagaagaattgaagaagatgcctggtgatgagctc 514

                                                                       
Query: 424 tcacctatatgcacatgttcacacacataggtagtcacaagagcttgggcacacatgctt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcacctatatgcacatgttcacacacataggtagtcacaagagcttgggcacacatgctt 454

                                                                       
Query: 484 tcaagcatgaatagacacacaatctctacagacttttctaactacataattatccaaggt 543
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcaggcatgaatagacacacaatctctacagacttttctaactacataattatccaaggt 394

                                                                       
Query: 544 tctaaatgtttcctctattgttgctgaagaaaatcttcatcacacctacacctcagcctg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tctaaatgtttcctctattgttgctgaagaaaatcttcatcacacctacacctcagcctg 334

                                                                       
Query: 604 tacttaattatagcctttgaaacataacacttaacccctcattcatgtttcaaccactag 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tacttaattatagcctttgaaacataacacttaacccctcattcatgtttcaaccactag 274

                           
Query: 664 gtgactcctatggaaa 679
           ||||||||||||||||
Sbjct: 273 gtgactcctatggaaa 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no179_d03.g1 MSMg01no179_d03.g1 CHROMAT_FILE:
MSMg01no179_d03.g1 PHD_FILE: MSMg01no179_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:09 2005
         (289 letters)



>mm_chr1_102510812_102511500
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggacaaatgagaaagtataaatgtgacagcaatgagaggatctggcctggctcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 agaggacaaatgagaaagtataaatgtgacagcaatgagaggatctggggtggctcctcc 260

                                                                       
Query: 61  tctacctgctttccctactgcccgaagtatatgctgctcttgattcctgcttctgctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctacctgctttccctactgcccgaagtatatgctgctcttgattcctgcttctgctggt 320

                                                                       
Query: 121 tcctgtagttgctgcttcctcctggtttatttgcttcttttgctattgttggatgctggg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tcctgtagttgctgcttcctcctggtttatttgcttcttttgctattgttggttgctggg 380

                                                                       
Query: 181 ttgctggattgctggatttcagagttgctggattgctggttactggttggagatatcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctggattgctggatttcagagttgctggattgctggttactggttggagatatcctg 440

                                                            
Query: 241 aagacaaagattagacttgcccctaggtacttgtagaacttgaagaatg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagacaaagattagacttgcccctaggtacttgtagaacttgaagaatg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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