XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAC
CATTGTCCCCATATTTGGTGTCAGGAGAACCATAATGTGGTTTCATTCAA
ATTCCTTAGCAACTTTTGAAGACAAGGACTTTAAAAAAATCATAGCCCTG
TTTGTATCTAAAGACAACAGGGATCCCTCTCTTTGAAAAGGCTATGTGCA
TGCCTGAGCTCAGGAGTCTTCCTTTACAAATATCCCTTATAACCTGTTTG
AAAATTTATTTCAGTAAATCTTCAACTCTGCTTCATACTGTCTTTTCCAA
AGATTAGCTGTTGTTACTACTGTAAGAAACTTTAAATATTGTTTTCCATC
AAATACAATAAACCATGTTTTTAACAAGGAATTTAAATCTTTTTTATTTT
CCCAACTTTATTAGACATTTATGCAAATATTCAAATCCCCTACCCAGCAA
ATTTTAGTTTACATGAAGGCTCTGCATCAGCTGTGTTCTCAGATTACAGT
TTCTGACCCCTTTCTCCTCCATTTACTGTATGTTTATTCTATTAAATCTG
GCCAATCTTAAAAGACCATAGTCAATGAAGAAAGGCACATCTCCCACCTG
CCTTAGAATAATATCCAAGTGCACTTTCTGTCCCTAGTGCTTGATCTGTT
CTGGTGACCAATGCCCCTTCCCCAACAAGAGTAAGTTTGCTTTGTCCAGA
TATTTCAGAGCGGTGGTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGATTGGAGGGACTTTCTAGGAAGTTCCAAAGAT
ACAAGATGATGGAGCCTCTTAAGAATCAATGTAGGTGACCTTTGTTGAAT
TGCCAAACAGTGCAGAGATGAAACCTGAAGAGTCCATCTTCAGTAGACAG
ATAGGACCCACAGGGGAGGGATGGGACCACCAACACAACTTTGAAATTTT
TACTCAAAACTTGTCCTGTCCGAAAGAAATTTAAGGACAGAGAAGGAGCA
GAGACTGAAGGAATGGTCAACCAATCACCAGCCCGTTTCTGAGACCCATT
CCTTTTGTTTATAACACCCCCTCACATTATTAATGATGCTGAGTTTTGAT
TGCACACAGTATCCAAACATAACAGCCCTCTGAGAGGCACTACCCAAGCA
GCTGACTGAAACAAATGCAGATACCTAGATAAGCATTGGATGGAGGATGT
GGACCCCTGTGGAAGAGTTAAGGGAAGTATTGAAAGACCTCAAGGTAACG
ACAATCCTACAGGAAAACCAACAGTGTACAGTAACCTTGGCTTCTGGGCA
CTCCCTGAGTCTGAGCCACCAACCATAAAGCATACATGGGCTGGTCCAGG
GCCCCAGAACATATGTGGCATAGGGCTATCAAGTCTGACCTCAGTTGGAG
AGGCTGCAAAAAAATCTTG

Query= MSMg01no179_d15.b1 MSMg01no179_d15.b1 CHROMAT_FILE:
MSMg01no179_d15.b1 PHD_FILE: MSMg01no179_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:11 2005
         (639 letters)



>mm_chr1_116570701_116571741
          Length = 1041

 Score = 1141 bits (590), Expect = 0.0
 Identities = 625/640 (97%), Gaps = 8/640 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaccattg---tccccatatttggtgtcaggagaaccataatgtggtttcatt 61
           |||||||||||||||   ||   ||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattccaaccattgcattc---atatttggtgtcaggggaaccataatgtggtttcatt 261

                                                                       
Query: 62  caaattccttagcaacttttgaagacaaggactttaaaaaaa--tcatagccctgtttgt 119
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 262 caaattccttagcaacttttgaagacaaggactttaaaaaaaaatcatagccctgtttgt 321

                                                                       
Query: 120 atctaaagacaacagggatccctctctttgaaaaggctatgtgcatgcctgagctcagga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atctaaagacaacagggatccctctctttgaaaaggctatgtgcatgcctgagctcagga 381

                                                                       
Query: 180 gtcttcctttacaaatatcccttataacctgtttgaaaatttatttcagtaaatcttcaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtcttcctttacaaatatcccttataacctgtttgaaaatttatttcagtaaatcttcaa 441

                                                                       
Query: 240 ctctgcttcatactgtcttttccaaagattagctgttgttactactgtaagaaactttaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctctgcttcatactgtcttttccaaagattagctgttgttactactgtaagaaactttaa 501

                                                                       
Query: 300 atattgttttccatcaaatacaataaaccatgtttttaacaaggaatttaaatctttttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atattgttttccatcaaatacaataaaccatgtttttaacaaggaatttaaatctttttt 561

                                                                       
Query: 360 attttcccaactttattagacatttatgcaaatattcaaatcccctacccagcaaatttt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 attttcccaactttattagacatttatgcaaatattcaaatcccctacccagcaaatttt 621

                                                                       
Query: 420 agtttacatgaaggctctgcatcagctgtgttctcagattacagtttctgacccctttct 479
           ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 622 agtttacataaaggctctgcatcagctgtgttctcagattacagtgtctgacccctttct 681

                                                                       
Query: 480 cctccatttactgtatgtttattctattaaatctggccaatcttaaaagaccatagtcaa 539
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 682 cctccatttactgtatgtttattctattaaatctagccaatcttaaaagaccatagtcaa 741

                                                                       
Query: 540 tgaagaaaggcacatctcccacctgccttagaataatatccaagtgcactttctgtccct 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 742 tgaagaaaggcacatctcccacctgccttagaataatatccaagtgcactttcggttcct 801

                                                   
Query: 600 agtgcttgatctgttctggtgaccaatgccccttccccaa 639
           |||||||||||||||||||||||||||| |||||||||||
Sbjct: 802 agtgcttgatctgttctggtgaccaatgtcccttccccaa 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1041
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1031
Effective search space:   648499
Effective search space used:   648499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)