Query= MSMg01no179_e04.b1 MSMg01no179_e04.b1 CHROMAT_FILE:
MSMg01no179_e04.b1 PHD_FILE: MSMg01no179_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:13 2005
(460 letters)
>mm_chr1_167275108_167275967
Length = 860
Score = 843 bits (436), Expect = 0.0
Identities = 454/460 (98%), Gaps = 1/460 (0%)
Strand = Plus / Minus
Query: 1 aggccagataataaatattttaggctttgctgccaggcaataaagtagaaactactaata 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 568 aggccagataataaatattttaggctttgctgccaggcagtaaagtagaaactactagta 509
Query: 61 ggcccttatatagctattttaaatgtaaccatttaaaaatgagactactggccataactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggcccttatatagctattttaaatgtaaccatttaaaaatgagactactggccataactt 449
Query: 121 gaaggtaataaaagaacagctgaccaagattttacaatcttttatcaaggttaaaatata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaaggtaataaaagaacagctgaccaagattttacaatcttttatcaaggttaaaatata 389
Query: 181 ttgtgttcactaacggtggtattaaagacaaaataaaattagtgtgttcattccttcagt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 388 ttgtgttcactaacggtggtattaaagacaaaataaaattagtgtgttcagtccttcagt 329
Query: 241 aatttcacatgttagacccatgagcatcagaatggtccttagaatgagagcacctctgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 328 aatttcacatgttagacccatgagcatcagaatggtccttagaatgagagcacctctctt 269
Query: 301 ttctcttagacggtatctcattgggtgtagccctggctgcctttgaacttagagatctgc 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttcgcttagacggtatctcattgggtgtagccctggctgcctttgaacttagagatctgc 209
Query: 361 tggcttctgcctccagagtgctgggattaaaggcctacagtgccagctacattgtggagt 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 208 tggcttctgcctccagagtgctgggatt-aaggcctacagtgccagctacattgtggagt 150
Query: 421 aaaggaaatggtggctttgttttgctttgctttgcttctc 460
||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aaaggaaatggtggctttgttttgctttgctttgcttctc 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_e04.g1 MSMg01no179_e04.g1 CHROMAT_FILE:
MSMg01no179_e04.g1 PHD_FILE: MSMg01no179_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:14 2005
(361 letters)
>mm_chr1_167149537_167150297
Length = 761
Score = 630 bits (326), Expect = 0.0
Identities = 343/350 (98%), Gaps = 5/350 (1%)
Strand = Plus / Plus
Query: 12 tgttgtgttgttttgtttttgtttttaaagacaaggtttctctgtgtagccttgtctgtc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgttgtgttgttttgtttttgtttttaaagacaaggtttctctgtgtagccttgtctgtc 274
Query: 72 ctagacctagctctgtaaaccaggctggtctccaactcaagtactccacctgcttctacc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctagacctagctctgtaaaccaggctggtctccaactcaagtactccacctgcttctacc 334
Query: 132 tcccaagtgctagggttaaagatgtgtgctactactaccatctggccctgaagagggatc 191
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 335 tcccaagtgctagggttaaagatgtgtgctactac---catctggccctgaagagggatc 391
Query: 192 tctaacaggacatcgtatagaagctaagggacagttttccttaaacacaagttaaatgta 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tctaacaggacatcgtatagaagctaagggacagttttccttaaacacaagttaaatgta 451
Query: 252 tacaaattttttggtcaaagcattcatacccaggacacgtttttt-ataaaacctttttt 310
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 452 tacaaattttttggtcaaagcattcatacccaggacacgtttttttataaaacctttttt 511
Query: 311 gattactagaacttaaaaaaaaaagacagcgcgcccaacaacagtgtgta 360
||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct: 512 gattactagaacttaaaaaaaaa-gacagcgtgtccaacaacagtgtgta 560
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space: 264704
Effective search space used: 264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
