TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATTTCATCCTTAAATTTTATTTTAGTTGATGACAATGATTTT
ATTGGCAATTACTTAATAACTACAGAATTTGGTAGCATTCAAGGACACTG
AAACATTTCTTCCCACCTTATGGCTGCATACAGCATAAAAGGTGCTTATA
GCTCTCTGGCAATGTTGCTCATGGCAGATTTGGGTAACCAGCTTTCCTGT
CTTTGGGTTAAATTTAAGACAAGGAGAGCAGGGGCTGGACATCCTTCCAA
ATAGTTTTTCATGATCACCTCTACACTTTTATAGTTTGTGGGTGTCAAAA
GGGGCAGTGTCAATGTTTAAATCACAGGAGTGTGGCTGTGGGCAAGCAAG
GTCCTTCCTGGCCTATCCCGCAGAGCTCTTGTATGGAGGTTAACTCTTCC
TAAGTGGGCTGTGAGGTCAGTTAGCCCAGAACCAAGCCCCTCAGAATTAC
TTGGCACTCATACTTTTTCCTCTGATTAAATTGCTCTGTAGGAAACCCAT
GAAACTTATCTTCAGACCAAAATCTCTACGATCGGCTACTCTGCATGCTA
GGCAGGTTCTGAAGACTGCTCACACTTCTTCTCAGCCCATAAATCATCAC
TATCTCCTATAGAGAAAGGAACAAATTGTAGACATTAAGAGCCTGCCCCA
AGTGATGTGGCTATTCAGGGGTTCCAAGCGGTTGACTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGATGGGTAGGTGACCTCTAT
CTTAATCATTGGCTCTATCTCTAGGGACATTCCAGAACCAGTGCTGAGAT
GTAGGGGGCTAGAAACTGTTGGTGGGGAAGTTTGGAAACTGTTGATGACC
TATTGTTCTTACCTCGGGTCAGGTGATGGGGTAGGGCAGGTTCTGAGGTC
TTGGAAACAGAGATTAAGGCCTAGTCTTCTGAACTACCAATGTGAAGTCT
GTCATGGAGTCAGCCTAGCCTGTCTTAATACAATATCTCTAGGATATGAA
CCTGGGTGTGGGGGGGGGCCCCTCCTCTCCTCCTTTTTCTTTTTTTTTTC
GCCTTTTTTTTTTTTCCCCCCCCCCTTTTTCTCCCTTGCCTATTTCTTCG
TCTCGCTCCCTCTTTGTATTGCCTTCTCTTCTTTCCTTTCTCCCTTCCCC
CTCCCTTTCCCCCTATTTCTCCTCTTTCCTTTTCCCTCTTTTCCCCCCAA
CTCCTTACTTTTCTCGCCCCGTTTCCGCTTTTTTCCTGCGTTTCTCTCGG
GCCTTTTCGTTTCTACCCTTTCTTTCCGTTTTTTTCTTTTTTTTCTCGCT
CCCCTACTCCCCTTTTAATCCTATCTTTTATTGTCCCCTTCTTTTTTTTT
TTCGCCCCCCCCTACACCCTTAATTTTTTTTTCCCCTCTTTTTCCTTTTC
CCTTTCCCCTACTCCCCTTTGTCCCCTTTCCG

Query= MSMg01no179_e13.b1 MSMg01no179_e13.b1 CHROMAT_FILE:
MSMg01no179_e13.b1 PHD_FILE: MSMg01no179_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:15 2005
         (610 letters)



>mm_chr1_11239253_11240262
          Length = 1010

 Score = 1125 bits (582), Expect = 0.0
 Identities = 600/606 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactatttcatccttaaattttattttagttgatgacaatgattttattggcaat 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gaattcactatttcattcttaaattttattttagttgatgacaatgattttattggcaat 751

                                                                       
Query: 65  tacttaataactacagaatttggtagcattcaaggacactgaaacatttcttcccacctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tacttaataactacagaatttggtagcattcaaggacactgaaacatttcttcccacctt 691

                                                                       
Query: 125 atggctgcatacagcataaaaggtgcttatagctctctggcaatgttgctcatggcagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 atggctgcatacagcataaaaggtgcttatagctctctggcaatgttgctcatggcagat 631

                                                                       
Query: 185 ttgggtaaccagctttcctgtctttgggttaaatttaagacaaggagagcaggggctgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttgggtaaccagctttcctgtctttgggttaaatttaagacaaggagagcaggggctgga 571

                                                                       
Query: 245 catccttccaaatagtttttcatgatcacctctacacttttatagtttgtgggtgtcaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 catccttccaaatagtttttcatgatcacctctacacttttatagtttgtgggtgtcaaa 511

                                                                       
Query: 305 aggggcagtgtcaatgtttaaatcacaggagtgtggctgtgggcaagcaaggtccttcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aggggcagtgtcaatgtttaaatcacaggagtgtggctgtgggcaagcaaggtccttcct 451

                                                                       
Query: 365 ggcctatcccgcagagctcttgtatggaggttaactcttcctaagtgggctgtgaggtca 424
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ggcctattctgcagagctcttgtatggaggttaactcttcctaagtgggctgtgaggtca 391

                                                                       
Query: 425 gttagcccagaaccaagcccctcagaattacttggcactcatactttttcctctgattaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gttagcccagaaccaagcccctcagaattacttggcactcatactttttcctctgattaa 331

                                                                       
Query: 485 attgctctgtaggaaacccatgaaacttatcttcagaccaaaatctctacgatcggctac 544
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct: 330 attgctctgtaggaaacccatcaaacttatcttcagaccaaaatctctaggattggctac 271

                                                                       
Query: 545 tctgcatgctaggcaggttctgaagactgctcacacttcttctcagcccataaatcatca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tctgcatgctaggcaggttctgaagactgctcacacttcttctcagcccataaatcatca 211

                 
Query: 605 ctatct 610
           ||||||
Sbjct: 210 ctatct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)