CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTATTTCTTCCTTAAATTTTATTTTAGTTGATGACAATGATTTT
ATTGGCAATTACTTAATAACTACAGAATTTGGTAGCATTCAAGGACACTG
AAACATTTCTTCCCACCTTATGGCTGCATACAGCATAAAAGGTGCTTATA
GCTCTCTGGCAATGTTGCTCATGGCAGATTTGGGTAACCAGCTTTCCTGT
CTTTGGGTTAAATTTAAGACAAGGAGAGCAGGGGCTGGACATCCTTCCAA
ATAGTTTTTCATGATCACCTCTACACTTTTATAGTTTGTGGGTGTCAAAA
GGGGCAGTGTCAATGTTTAAATCACAGGAGTGTGGCTGTGGGCAAGCAAG
GTCCTTCCTGGCCTATTCTGCAGAGCTCTTGTATGGAGGTTAACTCTTCC
TAAGTGGGCTGTGAGGTCAGTTAGCCCAGAACCAAGCCCCTCAGAATTAC
TTGGCACTCATACTTTTTCCTCTGATTAAATTGCTCTGTAGGAAACCCAT
GAAACTTATCTTCAGACCAAAATCTCTACGATCGGCTACTCTGCATGCTA
GGCAGGTTCTGAAGACTGCTCACACTTCTTCTCAGCCCATAAATCATCAC
TATCTCCAACAGAGAAAGGAAAAAAATTGTAGACATTAAGAGCCTGCCCC
AAGTGATGTGGCTATTCAGGGGTTCTAGGCGGCGGAC

TGGCGGCCGCCTGGGTTCGGTACTTGAGTGAACTATAGAAGGATTACAAT
ACATCGAGGGATGGGTAGGTGACCTCTATCTTAATCATTGGCTCTATCTC
TAGGGACATTCCAGAACCAGTGCTGAGATGTAGGGGGCTAGAAACTGTTG
GTGGGGAAGTTTGGAAACTGTTGATGACCTATTGTTCTTACCTCGGGTCA
GGTGATGGGGTAGGGCAGGTTCTGAGGTCTTGGATTCAGAGATTAAGGCC
TAGTCTTCTGAACTACCAATGTGAAGTCTGTCATGGAGTCAGCCTAGCCT
GTCTTATTAAATATCTCTAGGATATGAACCTGGGTGTGTTTTTTTTTCCC
CCCCCCCCCCCCCTGTTTGTTTTTTTATGTTGTTTTTTTTCCCCCCCGGG
GGGGGAAAAAAATACTGTGCCGCTGTTTGTTTTTTTCTCCACTCCTTTTT
TTCCCCTTTCGCATTTTTTTTTTTCTTTTCCTGTTCCCCCTTCACATTCT
CCTTTATTGTACACTTTTTTTTTAATTTTCTCCCTTCATCCTTTCTTTTC
CCCCCCCCTCTTGTCCCTTTCTTCTTTTTCCCTCCTTTCGTCACCCTTTT
TTTCCCCCCGCCCCGTTTTCTTCTTTTCTTTTTTTCCCTTCTTTTTTTTC
CCTCCCCTTTCTTTTTTTTTCCCTTCCTCTCTTTTTTTTCCCCTTCTACT
TTCCCTTTCCCCTTCTTCCTTTTCTTGTCGCCTTTGTTTTTCTCTCTTTT

Query= MSMg01no179_e14.b1 MSMg01no179_e14.b1 CHROMAT_FILE:
MSMg01no179_e14.b1 PHD_FILE: MSMg01no179_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:15 2005
         (629 letters)



>mm_chr1_11239234_11240262
          Length = 1029

 Score = 1172 bits (606), Expect = 0.0
 Identities = 621/626 (99%), Gaps = 2/626 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactatttc-ttccttaaattttattttagttgatgacaatgattttattggcaa 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 gaattcactatttcatt-cttaaattttattttagttgatgacaatgattttattggcaa 771

                                                                       
Query: 64  ttacttaataactacagaatttggtagcattcaaggacactgaaacatttcttcccacct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ttacttaataactacagaatttggtagcattcaaggacactgaaacatttcttcccacct 711

                                                                       
Query: 124 tatggctgcatacagcataaaaggtgcttatagctctctggcaatgttgctcatggcaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tatggctgcatacagcataaaaggtgcttatagctctctggcaatgttgctcatggcaga 651

                                                                       
Query: 184 tttgggtaaccagctttcctgtctttgggttaaatttaagacaaggagagcaggggctgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tttgggtaaccagctttcctgtctttgggttaaatttaagacaaggagagcaggggctgg 591

                                                                       
Query: 244 acatccttccaaatagtttttcatgatcacctctacacttttatagtttgtgggtgtcaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 acatccttccaaatagtttttcatgatcacctctacacttttatagtttgtgggtgtcaa 531

                                                                       
Query: 304 aaggggcagtgtcaatgtttaaatcacaggagtgtggctgtgggcaagcaaggtccttcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaggggcagtgtcaatgtttaaatcacaggagtgtggctgtgggcaagcaaggtccttcc 471

                                                                       
Query: 364 tggcctattctgcagagctcttgtatggaggttaactcttcctaagtgggctgtgaggtc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tggcctattctgcagagctcttgtatggaggttaactcttcctaagtgggctgtgaggtc 411

                                                                       
Query: 424 agttagcccagaaccaagcccctcagaattacttggcactcatactttttcctctgatta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agttagcccagaaccaagcccctcagaattacttggcactcatactttttcctctgatta 351

                                                                       
Query: 484 aattgctctgtaggaaacccatgaaacttatcttcagaccaaaatctctacgatcggcta 543
           |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct: 350 aattgctctgtaggaaacccatcaaacttatcttcagaccaaaatctctaggattggcta 291

                                                                       
Query: 544 ctctgcatgctaggcaggttctgaagactgctcacacttcttctcagcccataaatcatc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctctgcatgctaggcaggttctgaagactgctcacacttcttctcagcccataaatcatc 231

                                     
Query: 604 actatctccaacagagaaaggaaaaa 629
           ||||||||||||||||||||||||||
Sbjct: 230 actatctccaacagagaaaggaaaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)