BAC Information

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BAC

Clone NameMSMg01-179F24
Chromosome1 (Build37)
Map Location 56,000,370 - 56,144,308
singlet/doubletdoublet
Overlap gene9130227L01Rik
Upstream geneSf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179F24.T7 (MSMg01no179_f24.b1)MSMg01-179F24.TJ (MSMg01no179_f24.g1)
ACCAG373178AG373179
length729731
length of high quality
(start - end)		354 (376 - 729)291 (65 - 355)
definitionCHROMAT_FILE: MSMg01no179_f24.b1 PHD_FILE: MSMg01no179_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:22 2005CHROMAT_FILE: MSMg01no179_f24.g1 PHD_FILE: MSMg01no179_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,143,956 - 56,144,308)(56,000,370 - 56,000,659)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCAGCA
GATTGTGCTGATTCATTTTCAAAAGTTAATACAATCTTGTATATTTAGGG
TAAGTCCTACCTGGCCCCGTATTATAGGCTATGCTGTTGAGTCAGGTTTA
GTATTTTCCATTGATGTTCACGGGGATACTGGCCCATGGTTTCTTTATGA
CACAGGTGTCTCTTTAGCTTGGTTATTAGGGTACAGCTTGTCTTGTGAAA
TCAGGTGGAAGCTCTTTCCACTTTGTATTGGTAAAATTCTGCTGCCAGAT
AAGGTACAAAAACTGTGGGTAAGATTATACTCCTGCTGAGTCTTAAGCTC
CGGATACTGTTCGGCTTTCCTCCGAGATACCGCAAGGCTCTTCCCCTCTC
CATTCTTTTCTGCTTCTCTGCTCTGCTTTCCTCTTTTGGTGGCATTTGTT
TCTACAGTCTCTGCTGCTTTACTCTTTTCTCTTCAGCAGCTTTCCCCTTC
CCATTCTTTACAACCCTTCCCTAACGGATAAGCATTCGTACTAGATTTCT
TCACAGAATTCACCGTAGGCCTGGTTGGCTAATGGGCTATATAGCTTTCC
AACTCTTAGTCAAGAGTTATTTGTTCTACAACTGAGGCGATAATCAGCTT
GACTCTATTCAATATCTGATATGTTATAAGCTCTCTCCATTTCATTATGG
AACACATATCATTTACAGCCTAGGTAAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATGCATCCCTGAGGTTGATACTGTTTATTTTGCTTC
TTGGAATTTAACATGCAGCAGGCCTTCATTACCTCCTCATCTTATGGTGG
GGCATGAATATGTAAATTTACTTTCCACATTTTGAAAACTTGTGCATAAA
TCTTAATCTGCATTCCACTTCAATGGGTATGGAAAATACTTGCTTAGGAA
AAGATGACTACAAAGTTCACTGTTGGAAATCCCATGGGGAATGAGAGTCA
TCTTTATTTAGTTGCCTTTACCACCATAGTTTTTGAACTATTAGTGGGAA
GGACTATTTCACATCGACTTTACTGTTTTAACTGAGAGTGCTAAAGTGGT
TACAAGAGATGAAATCTTGGATTGAACCCAGGTTGGTAGCAAATGTAGAA
CATTACTAGTTGGTGTGTGTTTGACAATCCGTTTGAAATGAATGGGTACT
CTTGGTCCAGTTATTAGGAGATCAGTCTCTACAGCTCAGCATCTAGACAA
ATGGTACTAATTGGTAACTTTTCCTGGGAATCTTGTCTGAGCAGCAGAGA
GATGATTGAAAGAGCGGACAGTTATTGTTATCTTACAGACAATTTAAGTA
AAGATAATTAAAAACCCTTTCTCGAGGCTTAGGCATTTTTAATACTTGAA
AATTCTTTTTCTGCTCTGGCATTTACATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_f24.b1 MSMg01no179_f24.b1 CHROMAT_FILE:
MSMg01no179_f24.b1 PHD_FILE: MSMg01no179_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:22 2005
         (354 letters)



>mm_chr1_56143697_56144450
          Length = 754

 Score =  667 bits (345), Expect = 0.0
 Identities = 351/353 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataccgcaaggctcttcccctctccattcttttctgcttctctgctctgctttcctctt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 612 gataccgcaaggctcttcccctctccattctttactgcttctctgctctgctttcctctt 553

                                                                       
Query: 61  ttggtggcatttgtttctacagtctctgctgctttactcttttctcttcagcagctttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttggtggcatttgtttctacagtctctgctgctttactcttttctcttcagcagctttcc 493

                                                                       
Query: 121 ccttcccattctttacaacccttccctaacggataagcattcgtactagatttcttcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccttcccattctttacaacccttccctaacggataagcattcgtactagatttcttcaca 433

                                                                       
Query: 181 gaattcaccgtaggcctggttggctaatgggctatatagctttccaactcttagtcaaga 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gaattcactgtaggcctggttggctaatgggctatatagctttccaactcttagtcaaga 373

                                                                       
Query: 241 gttatttgttctacaactgaggcgataatcagcttgactctattcaatatctgatatgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gttatttgttctacaactgaggcgataatcagcttgactctattcaatatctgatatgtt 313

                                                                
Query: 301 ataagctctctccatttcattatggaacacatatcatttacagcctaggtaaa 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ataagctctctccatttcattatggaacacatatcatttacagcctaggtaaa 260


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no179_f24.g1 MSMg01no179_f24.g1 CHROMAT_FILE:
MSMg01no179_f24.g1 PHD_FILE: MSMg01no179_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:22 2005
         (291 letters)



>mm_chr1_56000170_56000860
          Length = 691

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatccctgaggttgatactgtttattttgcttcttggaatttaacatgcagcaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcatccctgaggttgatactgtttattttgcttcttggaatttaacatgcagcaggcc 260

                                                                       
Query: 61  ttcattacctcctcatcttatggtggggcatgaatatgtaaatttactttccacattttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcattacctcctcatcttatggtggggcatgaatatgtaaatttactttccacattttg 320

                                                                       
Query: 121 aaaacttgtgcataaatcttaatctgcattccacttcaatgggtatggaaaatacttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacttgtgcataaatcttaatctgcattccacttcaatgggtatggaaaatacttgct 380

                                                                       
Query: 181 taggaaaagatgactacaaagttcactgttggaaatcccatggggaatgagagtcatctt 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaaaagctgactacaaagttcactgttggaaatcccatggggaatgagagtcatctt 440

                                                             
Query: 241 tatttagttgcctttaccaccatagtttttgaactattagtgggaaggac 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttagttgcctttaccaccatagtttttgaactattagtgggaaggac 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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