BAC Information

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BAC

Clone NameMSMg01-179I04
Chromosome1 (Build37)
Map Location 195,537,989 - 195,538,277
singlet/doubletsinglet
Overlap genenone
Upstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208, EG623172, Plxna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179I04.T7 (MSMg01no179_i04.b1)MSMg01-179I04.TJ (MSMg01no179_i04.g1)
ACCAG373275AG373276
length707709
length of high quality
(start - end)
483 (46 - 528)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no179_i04.b1 PHD_FILE: MSMg01no179_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:32 2005CHROMAT_FILE: MSMg01no179_i04.g1 PHD_FILE: MSMg01no179_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCCAAACATAATAAAAAGCAATTTACTGCAAACCA
ACAGCCAATATCAAATTAAATGGAGACATGCTTGAAGCAATCCCACTGAA
ATCAGGGACAAGACAAGGATGCCCACTCTCCTCATATCTATTCAATATAA
TACTCAAAGTGTTAGTTAGAACAATAAGACAACAAAAAGAGATCAAGGGG
ATACAAATAGGTAAAGAAGAAATAAATGTATCACTATTTGCAGATGATAT
GATAGTATACATAAGTGACCCCAAAAATTCTACCAGAGAACTTCTCCAGC
TGATAAACAACTTCAGCAAAGTGGCCGGATATAAAATTAACTCAAATAAA
TCAATAGCCTTCCTTTATTCCAAGGATAAACAGACTGAGAAAGAAATTAG
GAAAACAATTCCCTTCACAATAGTCACAAATAGTATAAAATATCTTGGGG
TAACTCTAATCATACAAGTGAAAGACCTGTATGACATTAACTTCAAGTTC
CTTAATAAAGAAATCTAAGAAAATCCCAGAAGATGTAGAGATCGTCCATG
CTCATGTATTATTATAATTAACATAGTAAAAACGGCCTTTTCTACCAAGG
CAGTCTACAGATTTTTTGTGATCCCCATCATAATCCCAACTCTATTCTTC
ACAGACG
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGCCTCTTTGTTGGGTCGCACTGG
TATTTTCCGCCTGTTACTCACAGTCATCCTATTTATTTACACAATACCTG
ACATCTTCTCTAGCTCCATGAGAATCAGCTCCATGAGAATTGAGGTTTTG
TTTTTCTTTTTCCTTTTTCTTTATTTTTAAAGATTTATTTATTTAATGTA
TGTGAGTACACTGTCACTCTTCAGGCACACCAGAAGAGGGCATCAGACTC
TACTACAAATGGCTGTAAGCCACCATGTGGTTTCTGGGAATTAAACTCAT
GACCTCTATAAGAGCAGTCAGTGCTTTTAACCACTGAGCCATCTCTCCAG
CCTGGGGTTTTGTTTTCCCATTGTTGTAATTCATACCGTGATAACCTCTT
TTACAGCATTCTTTTGTTTAAGGTAGACTACATAAAAGCATTATCTACCT
TTGTGTCTCTTGTCTCCGTGGTTTATAAGAGAGCTTATTCCATTACTCAT
ATTCCCGACTCCGCACGTTTTTTCCCCCACTCGCTTTGTCCTCACCCTCT
CCTTCCTTTGTTTTTCTTGCCTCATAGTTATTTTTGAATCTTTCCCTCAG
TTTCCCTTTTTGTTTTTCTATCCCTTCTATCTTTCTTTTCCCCCTCTTTT
TTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_i04.g1 MSMg01no179_i04.g1 CHROMAT_FILE:
MSMg01no179_i04.g1 PHD_FILE: MSMg01no179_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:33 2005
         (289 letters)



>mm_chr1_195537939_195538627
          Length = 689

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcctctttgttgggtcgcactggtattttccgcctgttactcacagtcatcctattta 60
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 339 tggcctctttgttgggtcacactggtattttctgcctgttactcacagtcatcctattta 280

                                                                       
Query: 61  tttacacaatacctgacatcttctctagctccatgagaatcagctccatgagaattgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tttacacaatacctgacatcttctctagctccatgagaatcagctccatgagaattgagg 220

                                                                       
Query: 121 ttttgtttttctttttcctttttctttatttttaaagatttatttatttaatgtatgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttttgtttttctttttcctttttctttatttttaaagatttatttatttaatgtatgtga 160

                                                                       
Query: 181 gtacactgtcactcttcaggcacaccagaagagggcatcagactctactacaaatggctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gtacactgtcactcttcaggcacaccagaagagggcatcagactctactacaaatggctg 100

                                                            
Query: 241 taagccaccatgtggtttctgggaattaaactcatgacctctataagag 289
           |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 99  taagccaccatgtggtttctgggaattaaactcaggacctctagaagag 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)