BAC Information

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BAC

Clone NameMSMg01-179L11
Chromosome1 (Build37)
Map Location 18,513,007 - 18,513,613
singlet/doubletsinglet
Overlap genenone
Upstream genePi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
Downstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179L11.T7 (MSMg01no179_l11.b1)MSMg01-179L11.TJ (MSMg01no179_l11.g1)
ACCAG373413AG373414
length719768
length of high quality
(start - end)
613 (39 - 651)287 (67 - 353)
definitionCHROMAT_FILE: MSMg01no179_l11.b1 PHD_FILE: MSMg01no179_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:48 2005CHROMAT_FILE: MSMg01no179_l11.g1 PHD_FILE: MSMg01no179_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TAGCTCTTCGTAGATGGCTAGGATCCAGTGCCAGGTATGATTTTCCTCTT
GCTGAGTCCAATTTGACAAATATTGACCTTTGTTAGCTCAACAAAGGTAA
AAGGGAATTCCTGATGACATCATGCATGTCAGACACATGGCCCAGTAACC
CTTGAGCTGAAACTGGCTTTTATAGCACCACAAAGATCCAGTCATACGGG
CTTCCAAAGGAGAGGCAGCAACCAAAAGCCCTACACTGATATAACAACTA
TGATCCACAGAAATGACCAGCATGGCAGGGAGCATGAGAGCATAGTGATT
GAATGGACATGCTTAGTAATTACCAAAAATTTTAATTGCCACAATTAACA
CATATTTTAAAACTCAATATTCCAAAACAACCATGATTTTCAAATCAATC
TTAGCATCAGGTAAAATGGAAGAAGAACTATTAGCTATTTTTGTTAGAGT
CATTTTGCTATTGGCATCTTTTCTAGACAAGGTTCCTCTCGCCTATCCAG
GACTTGAAAGCCTTGTATATCATCAAAGATGAACTTGACTTCTAGTCTTT
TTACTTCTCTCCCCTAAGCATGAAGATAAGTTTTAAATTACCCCTCGTTA
CTACTCTGAGATTTACAAATAGCTTACATTTCTTCTTTTATAAACAGCAA
CCATGATATCTAGGGGAAG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCTTGGTAGACTTTAACTTTGATGAGTATGATG
GCTTTTTTGATAACCTGGGTTGGAAGTCAATTTTATTTGATATTAAAATA
GCTGCTCCAGCTTGTTTCTTCAGACTGTTTGCTTGGAAATTTGTTTTCCA
GCCTATCAATCTGTGGTAATGTCTGTCTTTTCCCCTGAAGTGGGTTTCCT
TTAAACAGCAAAATGTTGGGTCCTGTGTTTGTAGCCAGTCTGTTAGTCTA
TGTCTTTTTATTGGGGAATTGAGTCCATTGATATTAAGAGATATTAAAGA
AAAGTATTTGTTGCTTCCTGCTATTTTTGTGTTAAAGTTGGGATTCTGTT
CTTGCGGCCGACTTCTTTTAAGTTTGTTGAAGGATTACTTTCTTGCTCTT
TCTTAAGTGTAGTTTTCATCCTTGTATTGTTGTATTTCCTTTATTATATT
TAGGAATATGTGGATATTTGAAAAGATATTGCGCACATTATGTATCTGTC
AAGCAAATAATTTTGCTGATCTTTACTTAACTCGAATTTTTTCACATTTT
CCATTTTTATTACCTTTTTTAGTACCGGTATGCCTTAACACCACCCTAAC
CGCATTGTTTTATTCATACATTCACCGACTCTATGTATTCATCATTCTTT
ACTTATTTATTTTTATTCATCTTACTATTATCCCACTCTTCCTCCTATAT
TTTTTACTACCTTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_l11.b1 MSMg01no179_l11.b1 CHROMAT_FILE:
MSMg01no179_l11.b1 PHD_FILE: MSMg01no179_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:48 2005
         (613 letters)



>mm_chr1_18512804_18513813
          Length = 1010

 Score = 1021 bits (528), Expect = 0.0
 Identities = 589/610 (96%), Gaps = 4/610 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtagctcttcgtagatggctaggatccagtgccaggtatgattttcctcttgc 64
           |||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagtagctctgggtagttggctaggatccagtgccaggtatgattttcctcttgc 263

                                                                       
Query: 65  tgagtccaatttgacaaatattgacctttgttagctcaacaaaggtaaaagggaattcct 124
           |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 264 tgagtccaatttgagacatattgacctttgttagctcaacaaaggtaaaaaggaattgct 323

                                                                       
Query: 125 gatgacatcatgcatgtcagacacatggcccagtaacccttgagctgaaactggctttta 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 gatgacatcatgcatgtcagacacacggcccagtaacccttgagctgaaactggctttta 383

                                                                       
Query: 185 tagcaccacaaagatccagtcatacgggcttccaaaggagaggcagcaaccaaaagccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagcaccacaaagatccagtcatacgggcttccaaaggagaggcagcaaccaaaagccct 443

                                                                       
Query: 245 acactgatataacaactatgatccacagaaatgaccagcatggcaggg-agcatgagagc 303
           |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 444 acactgatatgacaactatgatcctcagaaatgaccagcatggcagggtagcatgagagc 503

                                                                       
Query: 304 atagtgattgaatggacatgcttagtaattaccaaaaattttaattgccacaattaacac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atagtgattgaatggacatgcttagtaattaccaaaaattttaattgccacaattaacac 563

                                                                       
Query: 364 atattttaaaactcaatattccaaaacaaccatgattttcaaatcaatcttagcatcagg 423
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atattttaaaattcaatattccaaaacaaccatgattttcaaatcaatcttagcatcagg 623

                                                                       
Query: 424 taaaatggaagaagaactattagctatttttgttagagtcattttgctattggcatcttt 483
           ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 taaaatggaggaagaagtattagctatttttgttagagccattttgctattggcatcttt 683

                                                                       
Query: 484 tctagacaaggttcctctcgcctatccaggacttgaaagccttgtatatcatcaaagatg 543
           ||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||
Sbjct: 684 tctagacaaggttcctctcacctatccaggacttgaaagccttgtat--catcaaagatg 741

                                                                       
Query: 544 aacttgacttctagtctttttacttctctcccctaagcatgaagataagttttaaattac 603
           ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct: 742 aacttgacttctagtctttttacttctctccccgaagtatgaagataagttt-aaattac 800

                     
Query: 604 ccctcgttac 613
           ||||||||||
Sbjct: 801 ccctcgttac 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1010
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1000
Effective search space:   603000
Effective search space used:   603000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)