Query= MSMg01no179_m09.b1 MSMg01no179_m09.b1 CHROMAT_FILE:
MSMg01no179_m09.b1 PHD_FILE: MSMg01no179_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:52 2005
(513 letters)
>mm_chr1_83429330_83430241
Length = 912
Score = 893 bits (462), Expect = 0.0
Identities = 497/512 (97%), Gaps = 7/512 (1%)
Strand = Plus / Minus
Query: 5 gaattccaccgccctccccccctctgcc---cccaacaaagcaagacaaacctttcaact 61
|||||||| ||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 712 gaattccagcgccctccccccc----ccactcccaacaaagcaagacaaacctttcaact 657
Query: 62 gcatgagttcgtagggaactgtgctcataagcagctaagccaaaggatgagtccctgtgg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gcatgagttcgtagggaactgtgctcataagcagctaagccaaaggatgagtccctgtgg 597
Query: 122 ctaaaatgagatcaactatgataaaactctgcccgcttagatgataacatttagtaatga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctaaaatgagatcaactatgataaaactctgcccgcttagatgataacatttagtaatga 537
Query: 182 gaactgaagagtgaggtggtgagagtgagagtaaccctagaccactgtgagcctctttgc 241
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gaactggagagtgaggtggtgagagtgagagtaaccctagaccactgtgagcctctttgc 477
Query: 242 aaagaaatgtacggggccatgcactgacagccgaggagcagaaccaaatttgtggttgaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aaagaaatgtacggggccatgcactgacagccgaggagcagaaccaaatttgtggttgaa 417
Query: 302 aaatgattatgaaaaagtgatcttgggttacaagtcaaacaacaggtactacttttttaa 361
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 416 aaatgattatgaaaaagtgatcttgggttacaagtcaaacaacaggtactacatttttaa 357
Query: 362 ggatggagacacccaccctgtttttaataaggagagtattgcaaagaaggaaagcaagac 421
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggatggagacagggatcctgtttttaataaggagagtattgcaaagaaggaaagcaagac 297
Query: 422 atgcactaggcacagagaatgaaggaccatgatgcatttaatggctaagaagatcattga 481
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atgcactaggcacagagaaggaaggaccatgatgcatttaatggctaagaagatcattga 237
Query: 482 agatagagagcaatgagtttcaggttatgcag 513
||||||||||||||||||||||||||||||||
Sbjct: 236 agatagagagcaatgagtttcaggttatgcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space: 453706
Effective search space used: 453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_m09.g1 MSMg01no179_m09.g1 CHROMAT_FILE:
MSMg01no179_m09.g1 PHD_FILE: MSMg01no179_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:52 2005
(418 letters)
>mm_chr1_83322291_83323110
Length = 820
Score = 731 bits (378), Expect = 0.0
Identities = 409/420 (97%), Gaps = 2/420 (0%)
Strand = Plus / Plus
Query: 1 agtgccatagcactaatagaaatacttcataggggaaggcattgcttgaacagttacagt 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 agtgccatagcactaatagaaatacttcataggggaaggcattgctcgaacagttacagt 260
Query: 61 tggtaataggagacagtaacaaaagaaacattcccagaaaaacacttgaagggaataatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtaataggagacagtaacaaaagaaacattcccagaaaaacacttgaagggaataatc 320
Query: 121 atagagttctgaaatccctcaacagccacttacctagctaagggaggggtgtatccctgg 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 atagagttctgaaatccctcaacagccacttacctagctaagggagtggtgtatccctgg 380
Query: 181 gtgatacagcctgcctcccagccctagtccagcaacttgtttactgggaacttatagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgatacagcctgcctcccagccctagtccagcaacttgtttactgggaacttatagctg 440
Query: 241 cacagagcttcttggtccaggaaaccagttcagaaacttctgtcattattactgataaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagagcttcttggtccaggaaaccagttcagaaacttctgtcattattactgataaac 500
Query: 301 tttttgttcattggaaaagaaatagaccagtcagtgtgtccagccacttgtctcatttat 360
||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||||||
Sbjct: 501 cttttgttcattggaaaagaaacagaccagtcggtgtgtccagtcactcgtctcatttat 560
Query: 361 ggttaaggcataaagaaacaatgggcagtctggaaa--ccctaataaatgatgttcacag 418
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 cattaaggcataaagaaacaatgggcagtctggaaaaaccctaataaatgatgttcacag 620
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 820
Length adjustment: 9
Effective length of query: 409
Effective length of database: 811
Effective search space: 331699
Effective search space used: 331699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
