Query= MSMg01no179_o06.b1 MSMg01no179_o06.b1 CHROMAT_FILE:
MSMg01no179_o06.b1 PHD_FILE: MSMg01no179_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:00 2005
(537 letters)
>mm_chr1_98051150_98052085
Length = 936
Score = 1000 bits (517), Expect = 0.0
Identities = 532/537 (99%), Gaps = 1/537 (0%)
Strand = Plus / Minus
Query: 1 tagtaagcccatgtcaaaaattgttttcaacatagtattttgtatttcatttggtatttg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 736 tagtaagcccatgtcaaaaattgttatcaacatagtattttgtatttcatttggtatttg 677
Query: 61 aacaagttgttgcctttcagtgcacatgtgagtctcctaaatgcccatagtaccaataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aacaagttgttgcctttcagtgcacatgtgagtctcctaaatgcccatagtaccaataaa 617
Query: 121 cataatgcgttaaactctaataaagtcttattaaaaaagtttcttaaaatataataaaac 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 616 cataatgcgttaaactctaataaagtcttatt-aaaaagtttcttaaaatataataaaac 558
Query: 181 aaccttaaaaagctatatagtcattttaactctgttaatatactggatggtcttatctac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaccttaaaaagctatatagtcattttaactctgttaatatactggatggtcttatctac 498
Query: 241 tgttaaatataaactctaaagtacattctatgtttttttgtaagccctcctcatcttact 300
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 497 tgttaaatataaacactaaagtacattctatgtttatttgtaagccctcctcatcttact 438
Query: 301 tttttaaaaacatgacaaagtaatcagatgtgatgctttcctctctttcaaagtagtaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttttaaaaacatgacaaagtaatcagatgtgatgctttcctctctttcaaagtagtaac 378
Query: 361 gtcaatgtagcattaaaacatgcttttcttgttgtggtcaacatgtgttaaaatctgtgt 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 gtcaatgtagcattaaaacatgcttttcttgttgtggtcaacatatgttaaaatctgtgt 318
Query: 421 tatattactctctactttcatgtaatttttagttgttatgtattattattataccttata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tatattactctctactttcatgtaatttttagttgttatgtattattattataccttata 258
Query: 481 attttgctcatataaaagattataatttattttaagtctctattgtacaaatacagt 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 attttgctcatataaaagattataatttattttaagtctctattgtacaaatacagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_o06.g1 MSMg01no179_o06.g1 CHROMAT_FILE:
MSMg01no179_o06.g1 PHD_FILE: MSMg01no179_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:01 2005
(488 letters)
>mm_chr1_97904970_97905858
Length = 889
Score = 866 bits (448), Expect = 0.0
Identities = 479/492 (97%), Gaps = 7/492 (1%)
Strand = Plus / Plus
Query: 1 ctgcttttataactcagtcactggatcacaaacc--agttaagctcttaggggtgttcat 58
|||||||||||||||||||||||||||||||||| || ||||||| |||||||| ||
Sbjct: 201 ctgcttttataactcagtcactggatcacaaacctaag---agctcttgggggtgttgat 257
Query: 59 aaagatatgaacaattgagtacatgtaatttaaaatcatcaattgccatatagaatgtga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaagatatgaacaattgagtacatgtaatttaaaatcatcaattgccatatagaatgtga 317
Query: 119 tttctacctttgggtcagttatttttgtttttctataatgtaatgtagttcatgaaccaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tttctacctttgggtcagttatttttgtttttctataatgtaatgtagttcatgaaccaa 377
Query: 179 gactttcaataaagaacagagaaagagaataaacgaatatggagagagatatgtttaaat 238
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 378 gactttcaataaagaacagagaaagagaataaaccaatatggagagagatatgtttaaat 437
Query: 239 ggtctcttaataaccaatgttaaaataaaaccaacatttcaaaaattatgctatgtgaaa 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggtctcttaagaaccaatgttaaaataaaaccaacatttcaaaaattatgctatgtgaaa 497
Query: 299 taaataatccagccacaggacaaaatagtatcatcaagaagcaaacaaggtttgaattat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taaataatccagccacaggacaaaatagtatcatcaagaagcaaacaaggtttgaattat 557
Query: 359 attatgtggaaaaa--aaaaagattcttcccattgagtgatctggggaagtactctcatt 416
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 attatgtggaaaaagaaaaaagattcttcccattgagtgatctggggaagtactctcatt 617
Query: 417 cttcctttgatcctttactgaagcttttctacaccatcgaaatgcacagaactgtgtctc 476
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 618 cttcctttgatcctttactgaagcttttccacaccatcaaaatgcacagaactgtgtctc 677
Query: 477 cagctgcatatg 488
||||||||||||
Sbjct: 678 cagctgcatatg 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space: 420162
Effective search space used: 420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
