Query= MSMg01no179_o14.b1 MSMg01no179_o14.b1 CHROMAT_FILE:
MSMg01no179_o14.b1 PHD_FILE: MSMg01no179_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:02 2005
(651 letters)
>mm_chr1_4399572_4400623
Length = 1052
Score = 1135 bits (587), Expect = 0.0
Identities = 633/651 (97%), Gaps = 6/651 (0%)
Strand = Plus / Plus
Query: 7 gaattcagaggcctcctagctgtagtaagaactatgaatattcatgtgttaatcctgtga 66
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcagaggccttatagctgtagtaagaactatgaatattcatgtgttaatcctgtga 261
Query: 67 tttacaaa-----caaaacaaaacaaaacaaaaaccctaccatttctggccaaatttaaa 121
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttacaaaaaaaacaaaacaaaacaaaacaaaaaccctaccatttctggccaaatttaaa 321
Query: 122 gcaagctttattacatattaaatactacaaagagatggacttcggtcaggaccatttccc 181
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 322 gcaagctttattacatattaaatactacaaagagatgggcttcggtcaggaccatttccc 381
Query: 182 tgaattcctcatctgagaatggcctcaagccacgtgttgcaggggtatgtatgagttaca 241
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgaattcctcatctgaggatggcctcaagccacgtgttgcaggggtatgtatgagttaca 441
Query: 242 ggagcgtagaaggacaaacctatagccagaatactttcccatgaagctttgttattgccc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggagcgtagaaggacaaacctatagccagaatactttcccatgaagctttgttattgccc 501
Query: 302 aaaaactacaattcccaatattccaggaagtcacctggttcatgcgcaggtgggacttac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaaaactacaattcccaatattccaggaagtcacctggttcatgcgcaggtgggacttac 561
Query: 362 agattcattttgggttcta-aaatggtctctcaactttcaattatactcctaacaattat 420
|||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |||
Sbjct: 562 agattcattttgggttttacaaatggtctctcaattttcaattgcactcctaacaactat 621
Query: 421 ataaacaaatagttgcgctatacaaagcagattttgtgcagtatagatagcccaggaggt 480
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 622 ataaacaaatagttgagctatacaaagcagattttgtgcagtatagctagcccaggaggt 681
Query: 481 gggggaaaaaaccctcataacagagtaaatatacctacctttgaaagtctccattatttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gggggaaaaaaccctcataacagagtaaatatacctacctttgaaagtctccattatttt 741
Query: 541 gattttggttatctggaaccctggatcaaggtccccagctgtttgttcttgtttacttca 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gattttggatatctggaaccctggatcaaggtccccagctgtttgttcttgtttacttca 801
Query: 601 aagtctttaccaagttatacctgatatacaaggatttgcaaatatgtaata 651
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aagtctttaccaagttatacctgatatacaaggatttgcaaatatgtaata 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1052
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1042
Effective search space: 667922
Effective search space used: 667922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_o14.g1 MSMg01no179_o14.g1 CHROMAT_FILE:
MSMg01no179_o14.g1 PHD_FILE: MSMg01no179_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:02 2005
(619 letters)
>mm_chr1_4541941_4542959
Length = 1019
Score = 1027 bits (531), Expect = 0.0
Identities = 543/547 (99%)
Strand = Plus / Minus
Query: 1 acaaagatccaactacctctgtttcccaagtaatctttcaatgtagttgcaagacaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 acaaagatccaactacctctgtttcccaagtaatctttcaatgtagttgcaagacaacat 488
Query: 61 tgaaacagactctaacagtgaatgaagttatccgttacaaattccccaatatttttctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgaaacagactctaacagtgaatgaagttatccgttacaaattccccaatatttttctga 428
Query: 121 attattcatcaatttcatcttcatagctaacaaagggagcatcctgaaatttgttatgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 attattcatcaatttcatcttcatagctaacaaagggagcatcctgaaatttgttatgta 368
Query: 181 aggagctatgcacacaacaaaggatgcattttaacactttacatatttctactatttaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aggagctatgcacacaacaaaggatgcattttaacactttacatatttctactatttaac 308
Query: 241 tttagattgaggacagcagaaaatatcattaaactgacatgattagacaaacctattgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tttagattgaggacagcagaaaatatcattaaactgacatgattagacaaacctattgac 248
Query: 301 catttatggctatgcttatggtgataataaaaattagagatttcagaccaggcatcctaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 catttatggctatgcttatggtgataataaaaattagagatttcagaccaggcatcctaa 188
Query: 361 tacacacctttaatcccagcacacaggagacaaagacaggtatatctgagaatttgaagc 420
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 187 tacacacctttaatcccagcacataggagacaaaggcaggtatatctgagaatttgaagc 128
Query: 421 tagccttgtctacgtacagttttccaggttaaccagggttatatagtaggaccttgtcta 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tagccttgtctatgtacagttttccaggttaaccagggttatatagtaggaccttgtcta 68
Query: 481 aaactaaattaaattaaaaattagagatttgaataaaattatttcaggccttagaaatta 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 67 aaactaaattaaattaaaaattagagatttgaataaaattatttcagcccttagaaatta 8
Query: 541 caaatta 547
|||||||
Sbjct: 7 caaatta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
